-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_207

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_207-snap.2-T1
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 8947, 9081
Sorry, prediction snap_scaffold_207-snap.3-T1 fails validation.
(ATG)	 AC	6650-6737	GT	AGG
(GTT)	 AG	8947-9081	GT	GGG
-recovered snap_scaffold_207-snap.3-T1, initial, 6650, 6737
-recovered snap_scaffold_207-snap.3-T1, internal, 8947, 9081

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2352, 2369
Sorry, prediction pasa_asmbl_27252.p1 fails validation.
(GAG)	 AC	2352-2369	GT	AGG
(ATC)	 AG	3495-4265	AA	GAA
-recovered pasa_asmbl_27252.p1, terminal, 3495, 4265
Couldn't classify 619, 658
Sorry, prediction snap_scaffold_207-snap.1-T1 fails validation.
(CTC)	 AG	619-658	GT	ACG
(GAG)	 AG	1714-1781	GT	TGG
(ATG)	 AG	2224-2369	GT	AGG
(ATC)	 AG	3495-4257	GT	CAG
(GAC)	 AG	5345-5655	GT	AAG
add_exon() Sorry, snap_scaffold_207-snap.1-T1 2224-2369-initial-1 is invalid.
-recovered snap_scaffold_207-snap.1-T1, initial, 2224, 2369
-recovered snap_scaffold_207-snap.1-T1, terminal, 5345, 5655
-recovered snap_scaffold_207-snap.1-T1, internal, 619, 658
-recovered snap_scaffold_207-snap.1-T1, internal, 1714, 1781
-recovered snap_scaffold_207-snap.1-T1, internal, 2224, 2369
-recovered snap_scaffold_207-snap.1-T1, internal, 3495, 4257
-recovered snap_scaffold_207-snap.1-T1, internal, 5345, 5655
Couldn't classify 1714, 1781
Sorry, prediction GlimmerHMM_glimmerT_60006-T1 fails validation.
(GAG)	 AG	1714-1781	GT	TGG
(ATG)	 AG	2224-2369	GT	AGG
(ATC)	 AG	3495-4265	AA	GAA
add_exon() Sorry, GlimmerHMM_glimmerT_60006-T1 2224-2369-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_60006-T1, initial, 2224, 2369
-recovered GlimmerHMM_glimmerT_60006-T1, terminal, 3495, 4265
-recovered GlimmerHMM_glimmerT_60006-T1, internal, 1714, 1781
-recovered GlimmerHMM_glimmerT_60006-T1, internal, 2224, 2369
Valid prediction for Augustus_model.g39746.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9026, rend_intergenic: 4521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9644
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 9026, rend_intergenic: 4521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support