-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2065

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 944, 1126
Sorry, prediction GlimmerHMM_glimmerT_61457-T1 fails validation.
(AAG)	 AG	944-1126	GT	CGG
(GAC)	 AG	1208-1482	CC	GAC
-recovered GlimmerHMM_glimmerT_61457-T1, terminal, 1208, 1482
-recovered GlimmerHMM_glimmerT_61457-T1, internal, 944, 1126
Couldn't classify 899, 1126
Couldn't classify 1208, 1426
Sorry, prediction Augustus_model.g40756.t1 fails validation.
(CCC)	 AG	899-1126	GT	CGG
(GAC)	 AG	1208-1426	GT	TGG
-recovered Augustus_model.g40756.t1, internal, 899, 1126
-recovered Augustus_model.g40756.t1, internal, 1208, 1426
Couldn't classify 39, 196
Couldn't classify 1431, 1567
Sorry, prediction snap_scaffold_2065-snap.1-T1 fails validation.
(TCC)	 AG	39-196	GT	CAG
(AAG)	 AG	944-1126	GT	CGG
(GAC)	 AG	1208-1426	GT	TGG
(GTA)	 AG	1431-1567	GT	TAG
-recovered snap_scaffold_2065-snap.1-T1, internal, 39, 196
-recovered snap_scaffold_2065-snap.1-T1, internal, 944, 1126
-recovered snap_scaffold_2065-snap.1-T1, internal, 1208, 1426
-recovered snap_scaffold_2065-snap.1-T1, internal, 1431, 1567
Sorry, intron length (3) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1615
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support