-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_206

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9083, 9407
Sorry, prediction snap_scaffold_206-snap.1-T1 fails validation.
(ATG)	 AA	289-455	GT	AAG
(TGA)	 AG	751-808	GT	GGG
(GAC)	 AG	2092-2186	GT	CTG
(CAG)	 AG	2710-2890	GT	AGG
(AGT)	 AG	5207-5290	GT	ACG
(TCT)	 AG	9083-9407	GT	AGG
-recovered snap_scaffold_206-snap.1-T1, initial, 289, 455
-recovered snap_scaffold_206-snap.1-T1, internal, 751, 808
-recovered snap_scaffold_206-snap.1-T1, internal, 2092, 2186
-recovered snap_scaffold_206-snap.1-T1, internal, 2710, 2890
-recovered snap_scaffold_206-snap.1-T1, internal, 5207, 5290
-recovered snap_scaffold_206-snap.1-T1, internal, 9083, 9407

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 271, 656
Sorry, prediction GlimmerHMM_glimmerT_60005-T1 fails validation.
(GTG)	 AG	271-656	GT	AGG
(CTA)	 AG	2406-2523	GT	TCG
(GCC)	 AG	4390-4500	GT	AGG
(AGG)	 AG	5425-5525	GT	AGG
(TTT)	 AG	6819-6909	GT	TGG
(GGG)	 AG	7462-7527	CT	AAC
-recovered GlimmerHMM_glimmerT_60005-T1, terminal, 7462, 7527
-recovered GlimmerHMM_glimmerT_60005-T1, internal, 271, 656
-recovered GlimmerHMM_glimmerT_60005-T1, internal, 2406, 2523
-recovered GlimmerHMM_glimmerT_60005-T1, internal, 4390, 4500
-recovered GlimmerHMM_glimmerT_60005-T1, internal, 5425, 5525
-recovered GlimmerHMM_glimmerT_60005-T1, internal, 6819, 6909
Couldn't classify 271, 656
Sorry, prediction Augustus_model.g39745.t1 fails validation.
(GTG)	 AG	271-656	GT	AGG
(GAG)	 AG	1399-1451	GT	TGG
(GAC)	 AG	2453-2523	GT	TCG
(GCC)	 AG	4390-4500	GT	AGG
(AGG)	 AG	5425-5525	GT	AGG
(TTT)	 AG	6819-6932	GT	ACG
(GGG)	 AG	7462-7597	GT	GGG
(AAG)	 AG	8864-8942	GT	TGG
(CTC)	 AG	9128-9150	TC	AGT
-recovered Augustus_model.g39745.t1, terminal, 9128, 9150
-recovered Augustus_model.g39745.t1, internal, 271, 656
-recovered Augustus_model.g39745.t1, internal, 1399, 1451
-recovered Augustus_model.g39745.t1, internal, 2453, 2523
-recovered Augustus_model.g39745.t1, internal, 4390, 4500
-recovered Augustus_model.g39745.t1, internal, 5425, 5525
-recovered Augustus_model.g39745.t1, internal, 6819, 6932
-recovered Augustus_model.g39745.t1, internal, 7462, 7597
-recovered Augustus_model.g39745.t1, internal, 8864, 8942
Couldn't classify 271, 656
Couldn't classify 7462, 7597
Sorry, prediction snap_scaffold_206-snap.2-T1 fails validation.
(GTG)	 AG	271-656	GT	AGG
(CTA)	 AG	2406-2487	GT	ACG
(GCC)	 AG	4390-4500	GT	AGG
(AGG)	 AG	5425-5525	GT	AGG
(TTT)	 AG	6819-6932	GT	ACG
(GGG)	 AG	7462-7597	GT	GGG
-recovered snap_scaffold_206-snap.2-T1, internal, 271, 656
-recovered snap_scaffold_206-snap.2-T1, internal, 2406, 2487
-recovered snap_scaffold_206-snap.2-T1, internal, 4390, 4500
-recovered snap_scaffold_206-snap.2-T1, internal, 5425, 5525
-recovered snap_scaffold_206-snap.2-T1, internal, 6819, 6932
-recovered snap_scaffold_206-snap.2-T1, internal, 7462, 7597

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9407, rend_intergenic: 2062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9658
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 9407, rend_intergenic: 2062  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support