-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2056

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 158, 217
Sorry, prediction GlimmerHMM_glimmerT_61453-T1 fails validation.
(TCT)	 AG	158-217	GT	GGG
(GAA)	 AG	341-404	GT	AGG
(TTC)	 AG	682-783	GC	GAG
-recovered GlimmerHMM_glimmerT_61453-T1, terminal, 682, 783
-recovered GlimmerHMM_glimmerT_61453-T1, internal, 158, 217
-recovered GlimmerHMM_glimmerT_61453-T1, internal, 341, 404
-recovered GlimmerHMM_glimmerT_61453-T1, internal, 682, 783
Couldn't classify 158, 217
Couldn't classify 1474, 1580
Sorry, prediction Augustus_model.g40751.t1 fails validation.
(TCT)	 AG	158-217	GT	GGG
(GAA)	 AG	341-404	GT	AGG
(TTC)	 AG	682-779	GT	AAG
(CCT)	 AG	1226-1268	GT	CGG
(TAT)	 AG	1474-1580	GT	AGG
-recovered Augustus_model.g40751.t1, internal, 158, 217
-recovered Augustus_model.g40751.t1, internal, 341, 404
-recovered Augustus_model.g40751.t1, internal, 682, 779
-recovered Augustus_model.g40751.t1, internal, 1226, 1268
-recovered Augustus_model.g40751.t1, internal, 1474, 1580
Couldn't classify 158, 217
Couldn't classify 1226, 1268
Sorry, prediction snap_scaffold_2056-snap.1-T1 fails validation.
(TCT)	 AG	158-217	GT	GGG
(GAA)	 AG	341-404	GT	AGG
(TTC)	 AG	682-779	GT	AAG
(CCT)	 AG	1226-1268	GT	CGG
-recovered snap_scaffold_2056-snap.1-T1, internal, 158, 217
-recovered snap_scaffold_2056-snap.1-T1, internal, 341, 404
-recovered snap_scaffold_2056-snap.1-T1, internal, 682, 779
-recovered snap_scaffold_2056-snap.1-T1, internal, 1226, 1268

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1623
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support