-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2055

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 374, 557
Couldn't classify 1096, 1195
Sorry, prediction Augustus_model.g40750.t1 fails validation.
(GGG)	 AG	374-557	GT	CGG
(AGA)	 AG	705-826	GT	AGG
(ATG)	 AG	1096-1195	GT	TGG
-recovered Augustus_model.g40750.t1, initial, 1096, 1195
-recovered Augustus_model.g40750.t1, internal, 374, 557
-recovered Augustus_model.g40750.t1, internal, 705, 826
-recovered Augustus_model.g40750.t1, internal, 1096, 1195
Couldn't classify 374, 557
Couldn't classify 1096, 1195
Sorry, prediction snap_scaffold_2055-snap.1-T1 fails validation.
(GGG)	 AG	374-557	GT	CGG
(AGA)	 AG	705-826	GT	AGG
(ATG)	 AG	1096-1195	GT	TGG
-recovered snap_scaffold_2055-snap.1-T1, initial, 1096, 1195
-recovered snap_scaffold_2055-snap.1-T1, internal, 374, 557
-recovered snap_scaffold_2055-snap.1-T1, internal, 705, 826
-recovered snap_scaffold_2055-snap.1-T1, internal, 1096, 1195
Valid prediction for GlimmerHMM_glimmerT_61452-T1
Couldn't classify 374, 557
Couldn't classify 1096, 1197
Sorry, prediction pasa_asmbl_27248.p1 fails validation.
(GGG)	 AG	374-557	GT	CGG
(AGA)	 AG	705-826	GT	AGG
(ATG)	 AG	1096-1197	AC	GTA
-recovered pasa_asmbl_27248.p1, internal, 374, 557
-recovered pasa_asmbl_27248.p1, internal, 705, 826

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1623
-exon list size: 8


building trellis

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50.0    
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80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support