-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_205

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_205-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_60004-T1
Couldn't classify 8804, 8979
Sorry, prediction snap_scaffold_205-snap.2-T1 fails validation.
(ATG)	 AG	2044-2141	GT	GGG
(GAG)	 AG	8804-8979	GT	TAG
-recovered snap_scaffold_205-snap.2-T1, initial, 2044, 2141
-recovered snap_scaffold_205-snap.2-T1, internal, 2044, 2141
-recovered snap_scaffold_205-snap.2-T1, internal, 8804, 8979

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 762, 813
Couldn't classify 5340, 5576
Sorry, prediction snap_scaffold_205-snap.3-T1 fails validation.
(GAA)	 AG	762-813	GT	TGG
(AGG)	 AG	1288-1379	GT	AGG
(CCA)	 AG	5340-5576	GT	AGG
-recovered snap_scaffold_205-snap.3-T1, internal, 762, 813
-recovered snap_scaffold_205-snap.3-T1, internal, 1288, 1379
-recovered snap_scaffold_205-snap.3-T1, internal, 5340, 5576

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8979, rend_intergenic: 4122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9697
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8979, rend_intergenic: 4122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support