-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_204

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_204-snap.1-T1
Valid prediction for Augustus_model.g39744.t1
Valid prediction for snap_scaffold_204-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_60002-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9067, 9158
Sorry, prediction snap_scaffold_204-snap.2-T1 fails validation.
(ATG)	 CC	2889-2942	GT	AGG
(GGG)	 AG	3224-3595	GT	CGG
(GGG)	 AG	3773-3855	GT	CGG
(CCT)	 AG	5564-5706	GT	AGG
(GGG)	 AG	9067-9158	GT	AGG
-recovered snap_scaffold_204-snap.2-T1, initial, 2889, 2942
-recovered snap_scaffold_204-snap.2-T1, internal, 3224, 3595
-recovered snap_scaffold_204-snap.2-T1, internal, 3773, 3855
-recovered snap_scaffold_204-snap.2-T1, internal, 5564, 5706
-recovered snap_scaffold_204-snap.2-T1, internal, 9067, 9158
Valid prediction for snap_scaffold_204-snap.3-T1
Couldn't classify 817, 933
Sorry, prediction GlimmerHMM_glimmerT_60003-T1 fails validation.
(CAG)	 AG	817-933	GT	AGG
(GTC)	 AG	1918-2010	CC	GAC
-recovered GlimmerHMM_glimmerT_60003-T1, terminal, 1918, 2010
-recovered GlimmerHMM_glimmerT_60003-T1, internal, 817, 933
Valid prediction for GlimmerHMM_glimmerT_60001-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4901, rend_intergenic: 559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9057, rend_intergenic: 7915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9716
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 4901, rend_intergenic: 559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9057, rend_intergenic: 7915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support