-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2038

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61444-T1
Couldn't classify 213, 446
Sorry, prediction Augustus_model.g40741.t1 fails validation.
(GTA)	 AG	213-446	GT	AGG
(GTG)	 AG	830-961	AT	AAA
-recovered Augustus_model.g40741.t1, terminal, 830, 961
-recovered Augustus_model.g40741.t1, internal, 213, 446
Couldn't classify 213, 446
Sorry, prediction snap_scaffold_2038-snap.1-T1 fails validation.
(GTA)	 AG	213-446	GT	AGG
(GTG)	 AG	830-961	AT	AAA
-recovered snap_scaffold_2038-snap.1-T1, terminal, 830, 961
-recovered snap_scaffold_2038-snap.1-T1, internal, 213, 446

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1643
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support