-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2032

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 62, 758
Sorry, prediction Augustus_model.g40739.t1 fails validation.
(GAC)	 AG	62-758	GT	AGG
(ACG)	 AG	1261-1583	CA	AGC
add_exon() Sorry, Augustus_model.g40739.t1 62-758-terminal-3 is invalid.
-recovered Augustus_model.g40739.t1, terminal, 62, 758
-recovered Augustus_model.g40739.t1, terminal, 1261, 1583
-recovered Augustus_model.g40739.t1, internal, 62, 758
Couldn't classify 119, 758
Couldn't classify 1261, 1568
Sorry, prediction pasa_asmbl_27243.p1 fails validation.
(GGC)	 GG	119-758	GT	AGG
(ACG)	 AG	1261-1568	GC	ACG
-recovered pasa_asmbl_27243.p1, internal, 1261, 1568
Couldn't classify 62, 758
Couldn't classify 1261, 1578
Sorry, prediction snap_scaffold_2032-snap.1-T1 fails validation.
(GAC)	 AG	62-758	GT	AGG
(ACG)	 AG	1261-1578	GT	AGG
add_exon() Sorry, snap_scaffold_2032-snap.1-T1 62-758-terminal-3 is invalid.
-recovered snap_scaffold_2032-snap.1-T1, terminal, 62, 758
-recovered snap_scaffold_2032-snap.1-T1, internal, 62, 758
-recovered snap_scaffold_2032-snap.1-T1, internal, 1261, 1578
Valid prediction for GlimmerHMM_glimmerT_61440-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1650
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support