-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2031

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 736, 925
Sorry, prediction snap_scaffold_2031-snap.1-T1 fails validation.
(GCT)	 AG	736-925	GT	GTG
(AAA)	 AG	1100-1120	TG	AGT
-recovered snap_scaffold_2031-snap.1-T1, terminal, 1100, 1120
-recovered snap_scaffold_2031-snap.1-T1, internal, 736, 925
Couldn't classify 1489, 1652
Sorry, prediction Augustus_model.g40738.t1 fails validation.
(ATG)	 CA	1489-1652		GA
Couldn't classify 736, 885
Sorry, prediction GlimmerHMM_glimmerT_61439-T1 fails validation.
(GCT)	 AG	736-885	GT	AGG
(CCC)	 AG	1036-1120	TG	AGT
-recovered GlimmerHMM_glimmerT_61439-T1, terminal, 1036, 1120
-recovered GlimmerHMM_glimmerT_61439-T1, internal, 736, 885

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1652
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support