-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2030

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61438-T1
Valid prediction for snap_scaffold_2030-snap.2-T1
Valid prediction for Augustus_model.g40737.t1
Valid prediction for GlimmerHMM_glimmerT_61436-T1
Couldn't classify 1314, 1493
Sorry, prediction Augustus_model.g40736.t1 fails validation.
(ATG)	 TG	770-903	GT	GAG
(ACT)	 AG	1028-1223	GT	AGG
(GTT)	 AG	1314-1493	GT	AGG
-recovered Augustus_model.g40736.t1, initial, 770, 903
-recovered Augustus_model.g40736.t1, internal, 1028, 1223
-recovered Augustus_model.g40736.t1, internal, 1314, 1493
Valid prediction for GlimmerHMM_glimmerT_61437-T1
Couldn't classify 1314, 1493
Sorry, prediction snap_scaffold_2030-snap.1-T1 fails validation.
(ATG)	 AC	1134-1223	GT	AGG
(GTT)	 AG	1314-1493	GT	AGG
-recovered snap_scaffold_2030-snap.1-T1, initial, 1134, 1223
-recovered snap_scaffold_2030-snap.1-T1, internal, 1314, 1493

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1652
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support