-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_203

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_203-snap.2-T1
Valid prediction for snap_scaffold_203-snap.4-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59998-T1
Valid prediction for GlimmerHMM_glimmerT_59999-T1
Couldn't classify 9500, 9643
Sorry, prediction Augustus_model.g39743.t1 fails validation.
(ATG)	 GG	3726-3756	GT	CCG
(GTT)	 AG	4530-4600	GT	AGG
(AGG)	 AG	5688-5752	GT	AGG
(CAA)	 AG	6712-6778	GT	AGG
(GGT)	 AG	7551-7669	GT	AGG
(GGA)	 AG	8004-8084	GT	AGG
(ACA)	 AG	8637-8749	GT	AGG
(ACA)	 AG	8997-9145	GT	CAG
(AAT)	 AG	9500-9643	GT	GGG
-recovered Augustus_model.g39743.t1, initial, 3726, 3756
-recovered Augustus_model.g39743.t1, internal, 4530, 4600
-recovered Augustus_model.g39743.t1, internal, 5688, 5752
-recovered Augustus_model.g39743.t1, internal, 6712, 6778
-recovered Augustus_model.g39743.t1, internal, 7551, 7669
-recovered Augustus_model.g39743.t1, internal, 8004, 8084
-recovered Augustus_model.g39743.t1, internal, 8637, 8749
-recovered Augustus_model.g39743.t1, internal, 8997, 9145
-recovered Augustus_model.g39743.t1, internal, 9500, 9643
Couldn't classify 9500, 9709
Sorry, prediction snap_scaffold_203-snap.1-T1 fails validation.
(ATG)	 AG	5759-5826	GT	GGG
(CAA)	 AG	6712-6778	GT	AGG
(GGT)	 AG	7551-7669	GT	AGG
(GGA)	 AG	8004-8084	GT	AGG
(ACA)	 AG	8637-8749	GT	AGG
(ACA)	 AG	8997-9145	GT	CAG
(AAT)	 AG	9500-9709	GT	AGG
-recovered snap_scaffold_203-snap.1-T1, initial, 5759, 5826
-recovered snap_scaffold_203-snap.1-T1, internal, 5759, 5826
-recovered snap_scaffold_203-snap.1-T1, internal, 6712, 6778
-recovered snap_scaffold_203-snap.1-T1, internal, 7551, 7669
-recovered snap_scaffold_203-snap.1-T1, internal, 8004, 8084
-recovered snap_scaffold_203-snap.1-T1, internal, 8637, 8749
-recovered snap_scaffold_203-snap.1-T1, internal, 8997, 9145
-recovered snap_scaffold_203-snap.1-T1, internal, 9500, 9709
Valid prediction for snap_scaffold_203-snap.3-T1
Couldn't classify 4530, 4600
Sorry, prediction GlimmerHMM_glimmerT_60000-T1 fails validation.
(GTT)	 AG	4530-4600	GT	AGG
(AGG)	 AG	5688-5756	AG	AAA
-recovered GlimmerHMM_glimmerT_60000-T1, terminal, 5688, 5756
-recovered GlimmerHMM_glimmerT_60000-T1, internal, 4530, 4600

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3966, rend_intergenic: 1966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9710, rend_intergenic: 7170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9724
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3966, rend_intergenic: 1966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9710, rend_intergenic: 7170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support