-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_201

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9251, 9491
Sorry, prediction snap_scaffold_201-snap.2-T1 fails validation.
(ATG)	 CG	639-693	GT	AGG
(AAA)	 AG	1013-1300	GT	CAG
(CGC)	 AG	1635-1981	GT	CCG
(TAT)	 AG	7302-7448	GT	AGG
(GAA)	 AG	9251-9491	GT	AGG
-recovered snap_scaffold_201-snap.2-T1, initial, 639, 693
-recovered snap_scaffold_201-snap.2-T1, internal, 1013, 1300
-recovered snap_scaffold_201-snap.2-T1, internal, 1635, 1981
-recovered snap_scaffold_201-snap.2-T1, internal, 7302, 7448
-recovered snap_scaffold_201-snap.2-T1, internal, 9251, 9491
Valid prediction for GlimmerHMM_glimmerT_59996-T1
Couldn't classify 76, 152
Sorry, prediction snap_scaffold_201-snap.1-T1 fails validation.
(GTC)	 AG	76-152	GT	AGG
(CAA)	 AG	405-626	GA	AAG
-recovered snap_scaffold_201-snap.1-T1, terminal, 405, 626
-recovered snap_scaffold_201-snap.1-T1, internal, 76, 152
Couldn't classify 9251, 9491
Sorry, prediction Augustus_model.g39742.t1 fails validation.
(ATG)	 AC	7323-7448	GT	AGG
(GAA)	 AG	9251-9491	GT	AGG
-recovered Augustus_model.g39742.t1, initial, 7323, 7448
-recovered Augustus_model.g39742.t1, internal, 9251, 9491
Couldn't classify 9251, 9491
Sorry, prediction GlimmerHMM_glimmerT_59997-T1 fails validation.
(ATG)	 TC	4836-4883	GT	AGG
(TAT)	 AG	7302-7448	GT	AGG
(GAA)	 AG	9251-9491	GT	AGG
-recovered GlimmerHMM_glimmerT_59997-T1, initial, 4836, 4883
-recovered GlimmerHMM_glimmerT_59997-T1, internal, 7302, 7448
-recovered GlimmerHMM_glimmerT_59997-T1, internal, 9251, 9491
Couldn't classify 76, 178
Sorry, prediction Augustus_model.g39741.t1 fails validation.
(GTC)	 AG	76-178	GT	CGG
(AAC)	 AG	814-941	GG	AGG
-recovered Augustus_model.g39741.t1, terminal, 814, 941
-recovered Augustus_model.g39741.t1, internal, 76, 178

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_201-snap.3-T1
Couldn't classify 467, 594
Sorry, prediction snap_scaffold_201-snap.4-T1 fails validation.
(TCA)	 AG	467-594	GT	AGG
(AGA)	 AG	758-1637	GT	AGG
(GAT)	 AG	2421-2495	GG	GAG
-recovered snap_scaffold_201-snap.4-T1, terminal, 2421, 2495
-recovered snap_scaffold_201-snap.4-T1, internal, 467, 594
-recovered snap_scaffold_201-snap.4-T1, internal, 758, 1637

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9491, rend_intergenic: 2466  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9838
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 9491, rend_intergenic: 2466  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support