-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_200

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59995-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59995-T1 9098-9804-terminal-1 is invalid.
Couldn't classify 9098, 9583
Sorry, prediction snap_scaffold_200-snap.1-T1 fails validation.
(ATG)	 TG	8871-8892	GT	GGG
(TTG)	 AG	9098-9583	GT	AGG
-recovered snap_scaffold_200-snap.1-T1, initial, 8871, 8892
-recovered snap_scaffold_200-snap.1-T1, internal, 9098, 9583
Couldn't classify 9098, 9583
Sorry, prediction Augustus_model.g39740.t1 fails validation.
(ATG)	 TG	8871-8892	GT	GGG
(TTG)	 AG	9098-9583	GT	AGG
-recovered Augustus_model.g39740.t1, initial, 8871, 8892
-recovered Augustus_model.g39740.t1, internal, 9098, 9583

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9846
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support