-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_8580013-8746152

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g30870.t1
Valid prediction for snap_scaffold_20-snap.1892-T1
Valid prediction for snap_scaffold_20-snap.1861-T1
Valid prediction for snap_scaffold_20-snap.1890-T1
Valid prediction for Augustus_model.g30873.t1
Valid prediction for CodingQuarry_transcript_30582-T1
Valid prediction for snap_scaffold_20-snap.1872-T1
Valid prediction for Augustus_model.g30872.t1
Valid prediction for snap_scaffold_20-snap.1865-T1
Valid prediction for snap_scaffold_20-snap.1888-T1
Valid prediction for Augustus_model.g30871.t1
Valid prediction for snap_scaffold_20-snap.1880-T1
Valid prediction for snap_scaffold_20-snap.1873-T1
Valid prediction for snap_scaffold_20-snap.1881-T1
Valid prediction for snap_scaffold_20-snap.1869-T1
Valid prediction for snap_scaffold_20-snap.1885-T1
Valid prediction for Augustus_model.g30875.t1
Valid prediction for snap_scaffold_20-snap.1875-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_46485-T1
Valid prediction for pasa_asmbl_26793.p1
Valid prediction for snap_scaffold_20-snap.1882-T1
Valid prediction for snap_scaffold_20-snap.1886-T1
Valid prediction for GlimmerHMM_glimmerT_46491-T1
Valid prediction for GlimmerHMM_glimmerT_46484-T1
Valid prediction for snap_scaffold_20-snap.1893-T1
Valid prediction for GlimmerHMM_glimmerT_46486-T1
Valid prediction for pasa_asmbl_26795.p1
Valid prediction for GlimmerHMM_glimmerT_46481-T1
Valid prediction for GlimmerHMM_glimmerT_46499-T1
Valid prediction for Augustus_model.g30884.t1
Valid prediction for Augustus_model.g30883.t1
Couldn't classify 35046, 35223
Sorry, prediction pasa_asmbl_26791.p1 fails validation.
(TCC)	 CC	35046-35223	GT	TGG
(GAC)	 AG	35534-35582	GT	GTG
(GGT)	 AG	35749-35855	GT	AGG
(GTG)	 AG	36119-36206	GT	AGG
(AGA)	 AG	36377-36533	GG	GAG
-recovered pasa_asmbl_26791.p1, terminal, 36377, 36533
-recovered pasa_asmbl_26791.p1, internal, 35534, 35582
-recovered pasa_asmbl_26791.p1, internal, 35749, 35855
-recovered pasa_asmbl_26791.p1, internal, 36119, 36206
Valid prediction for Augustus_model.g30879.t1
Valid prediction for GlimmerHMM_glimmerT_46476-T1
Valid prediction for GlimmerHMM_glimmerT_46479-T1
Valid prediction for GlimmerHMM_glimmerT_46498-T1
Valid prediction for Augustus_model.g30877.t1
Valid prediction for snap_scaffold_20-snap.1878-T1
Valid prediction for snap_scaffold_20-snap.1867-T1
Valid prediction for GlimmerHMM_glimmerT_46477-T1
Valid prediction for Augustus_model.g30878.t1
Valid prediction for snap_scaffold_20-snap.1866-T1
Valid prediction for GlimmerHMM_glimmerT_46490-T1
Valid prediction for GlimmerHMM_glimmerT_46475-T1
Valid prediction for snap_scaffold_20-snap.1877-T1
Valid prediction for GlimmerHMM_glimmerT_46473-T1
Valid prediction for snap_scaffold_20-snap.1876-T1
Valid prediction for snap_scaffold_20-snap.1860-T1
Valid prediction for GlimmerHMM_glimmerT_46489-T1
Valid prediction for GlimmerHMM_glimmerT_46487-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 43578, 44195
Sorry, prediction pasa_asmbl_26009.p1 fails validation.
(GGC)	 AT	43578-44195	GG	AAG
Valid prediction for Augustus_model.g30869.t1
Valid prediction for GlimmerHMM_glimmerT_46483-T1
Valid prediction for snap_scaffold_20-snap.1879-T1
Valid prediction for snap_scaffold_20-snap.1889-T1
Valid prediction for GlimmerHMM_glimmerT_46493-T1
Valid prediction for snap_scaffold_20-snap.1871-T1
Valid prediction for Augustus_model.g30874.t1
Valid prediction for GlimmerHMM_glimmerT_46482-T1
Valid prediction for GlimmerHMM_glimmerT_46474-T1
Valid prediction for snap_scaffold_20-snap.1863-T1
Valid prediction for snap_scaffold_20-snap.1862-T1
Valid prediction for GlimmerHMM_glimmerT_46492-T1
Valid prediction for snap_scaffold_20-snap.1859-T1
Valid prediction for GlimmerHMM_glimmerT_46494-T1
Valid prediction for Augustus_model.g30882.t1
Valid prediction for snap_scaffold_20-snap.1874-T1
Valid prediction for snap_scaffold_20-snap.1870-T1
Valid prediction for GlimmerHMM_glimmerT_46478-T1
Valid prediction for snap_scaffold_20-snap.1883-T1
Valid prediction for Augustus_model.g30868.t1
Valid prediction for GlimmerHMM_glimmerT_46495-T1
Valid prediction for snap_scaffold_20-snap.1864-T1
Valid prediction for Augustus_model.g30880.t1
Valid prediction for Augustus_model.g30881.t1
Valid prediction for GlimmerHMM_glimmerT_46480-T1
Valid prediction for GlimmerHMM_glimmerT_46497-T1
Valid prediction for Augustus_model.g30876.t1
Valid prediction for snap_scaffold_20-snap.1891-T1
Valid prediction for GlimmerHMM_glimmerT_46496-T1
Valid prediction for snap_scaffold_20-snap.1868-T1
Valid prediction for GlimmerHMM_glimmerT_46472-T1
Valid prediction for snap_scaffold_20-snap.1887-T1
Valid prediction for snap_scaffold_20-snap.1884-T1
Valid prediction for GlimmerHMM_glimmerT_46488-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 56438, rend_intergenic: 54525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62156, rend_intergenic: 58979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66996, rend_intergenic: 66553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77334, rend_intergenic: 67940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107027, rend_intergenic: 102197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115375, rend_intergenic: 113985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123858, rend_intergenic: 121128  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128023, rend_intergenic: 124372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145769, rend_intergenic: 139648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 166140
-exon list size: 266


building trellis

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84.7    
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96.6    
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97.8    
98.1    
98.5    
98.9    
99.3    
99.6    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 56438, rend_intergenic: 54525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62156, rend_intergenic: 58979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66996, rend_intergenic: 66553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77334, rend_intergenic: 67940  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107027, rend_intergenic: 102197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115375, rend_intergenic: 113985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123858, rend_intergenic: 121128  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128023, rend_intergenic: 124372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145769, rend_intergenic: 139648  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10139
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support