-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_7999241-8183013

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g30811.t1
Valid prediction for snap_scaffold_20-snap.1765-T1
Valid prediction for GlimmerHMM_glimmerT_46407-T1
Valid prediction for GlimmerHMM_glimmerT_46393-T1
Valid prediction for GlimmerHMM_glimmerT_46413-T1
Valid prediction for snap_scaffold_20-snap.1762-T1
Valid prediction for GlimmerHMM_glimmerT_46402-T1
Valid prediction for GlimmerHMM_glimmerT_46398-T1
Valid prediction for snap_scaffold_20-snap.1742-T1
Valid prediction for snap_scaffold_20-snap.1760-T1
Valid prediction for snap_scaffold_20-snap.1777-T1
Valid prediction for snap_scaffold_20-snap.1745-T1
Valid prediction for GlimmerHMM_glimmerT_46399-T1
Valid prediction for CodingQuarry_transcript_30569-T1
Valid prediction for snap_scaffold_20-snap.1747-T1
Valid prediction for Augustus_model.g30812.t1
Valid prediction for snap_scaffold_20-snap.1766-T1
Valid prediction for snap_scaffold_20-snap.1753-T1
Valid prediction for GlimmerHMM_glimmerT_46404-T1
Valid prediction for GlimmerHMM_glimmerT_46411-T1
Valid prediction for HiQ_model.g30807.t1
Valid prediction for HiQ_model.g30803.t1
Valid prediction for snap_scaffold_20-snap.1752-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g30820.t1
Valid prediction for GlimmerHMM_glimmerT_46392-T1
Valid prediction for Augustus_model.g30814.t1
Valid prediction for GlimmerHMM_glimmerT_46395-T1
Valid prediction for GlimmerHMM_glimmerT_46396-T1
Valid prediction for snap_scaffold_20-snap.1750-T1
Valid prediction for pasa_asmbl_26739.p1
Valid prediction for Augustus_model.g30806.t1
Valid prediction for snap_scaffold_20-snap.1757-T1
Valid prediction for HiQ_model.g30823.t1
Couldn't classify 168243, 168407
Sorry, prediction pasa_asmbl_26747.p1 fails validation.
(TCA)	 AC	168243-168407	GT	AAG
(ACG)	 AG	168840-168977	AG	AAA
-recovered pasa_asmbl_26747.p1, terminal, 168840, 168977
Valid prediction for snap_scaffold_20-snap.1758-T1
Valid prediction for GlimmerHMM_glimmerT_46405-T1
Valid prediction for snap_scaffold_20-snap.1754-T1
Couldn't classify 36447, 36594
Sorry, prediction pasa_asmbl_27132.p1 fails validation.
(ATG)	 TC	35387-35507	GT	AGG
(CTG)	 AG	35617-35746	GT	AGG
(GGT)	 AG	36447-36594	GG	GGG
-recovered pasa_asmbl_27132.p1, initial, 35387, 35507
-recovered pasa_asmbl_27132.p1, internal, 35617, 35746
Valid prediction for snap_scaffold_20-snap.1759-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_20-snap.1740-T1
Valid prediction for GlimmerHMM_glimmerT_46415-T1
Valid prediction for snap_scaffold_20-snap.1773-T1
Valid prediction for GlimmerHMM_glimmerT_46414-T1
Valid prediction for snap_scaffold_20-snap.1775-T1
Valid prediction for Augustus_model.g30802.t1
Valid prediction for snap_scaffold_20-snap.1771-T1
Valid prediction for snap_scaffold_20-snap.1743-T1
Valid prediction for GlimmerHMM_glimmerT_46412-T1
Valid prediction for GlimmerHMM_glimmerT_46406-T1
Valid prediction for GlimmerHMM_glimmerT_46403-T1
Valid prediction for snap_scaffold_20-snap.1770-T1
Valid prediction for snap_scaffold_20-snap.1751-T1
Valid prediction for HiQ_model.g30822.t1
Valid prediction for snap_scaffold_20-snap.1764-T1
Valid prediction for snap_scaffold_20-snap.1767-T1
Valid prediction for Augustus_model.g30818.t1
Valid prediction for GlimmerHMM_glimmerT_46408-T1
Valid prediction for GlimmerHMM_glimmerT_46410-T1
Valid prediction for snap_scaffold_20-snap.1768-T1
Valid prediction for snap_scaffold_20-snap.1763-T1
Valid prediction for Augustus_model.g30821.t1
Valid prediction for snap_scaffold_20-snap.1772-T1
Valid prediction for pasa_asmbl_25954.p1
Valid prediction for CodingQuarry_transcript_30571-T1
Valid prediction for snap_scaffold_20-snap.1756-T1
Valid prediction for GlimmerHMM_glimmerT_46400-T1
Valid prediction for Augustus_model.g30808.t1
Valid prediction for GlimmerHMM_glimmerT_46391-T1
Couldn't classify 69001, 69271
Sorry, prediction pasa_asmbl_25962.p1 fails validation.
(CAA)	 TC	69001-69271	GT	TGG
(GTG)	 AG	69470-69543	GT	TGG
(GAC)	 AG	69698-70165	GC	GAG
-recovered pasa_asmbl_25962.p1, terminal, 69698, 70165
-recovered pasa_asmbl_25962.p1, internal, 69470, 69543
-recovered pasa_asmbl_25962.p1, internal, 69698, 70165
Valid prediction for HiQ_model.g30816.t1
Valid prediction for GlimmerHMM_glimmerT_46397-T1
Valid prediction for pasa_asmbl_25965.p1
Valid prediction for GlimmerHMM_glimmerT_46394-T1
Valid prediction for pasa_asmbl_25969.p1
Valid prediction for Augustus_model.g30824.t1
Valid prediction for Augustus_model.g30805.t1
Valid prediction for CodingQuarry_transcript_30570-T1
Couldn't classify 159940, 160077
Sorry, prediction pasa_asmbl_25957.p1 fails validation.
(TTT)	 CT	159940-160077	GT	AGG
(TGT)	 AG	160251-160358	GT	CTG
(GCT)	 AG	160959-161069	GT	TGG
(ATG)	 AG	161193-161255	AT	GAA
-recovered pasa_asmbl_25957.p1, terminal, 161193, 161255
-recovered pasa_asmbl_25957.p1, internal, 160251, 160358
-recovered pasa_asmbl_25957.p1, internal, 160959, 161069
Valid prediction for snap_scaffold_20-snap.1746-T1
Valid prediction for snap_scaffold_20-snap.1774-T1
Valid prediction for pasa_asmbl_25973.p1
Valid prediction for Augustus_model.g30813.t1
Valid prediction for Augustus_model.g30817.t1
Valid prediction for snap_scaffold_20-snap.1776-T1
Valid prediction for HiQ_model.g30804.t1
Couldn't classify 176594, 176658
Sorry, prediction pasa_asmbl_25953.p1 fails validation.
(CAG)	 TT	176594-176658	GT	AGG
(GCT)	 AG	176874-176998	GT	AGG
(ACG)	 AG	177220-177400	GT	GGG
(GTG)	 AG	177645-177750	GT	AGG
(ATC)	 AG	177882-177956	CT	AGC
-recovered pasa_asmbl_25953.p1, terminal, 177882, 177956
-recovered pasa_asmbl_25953.p1, internal, 176874, 176998
-recovered pasa_asmbl_25953.p1, internal, 177220, 177400
-recovered pasa_asmbl_25953.p1, internal, 177645, 177750
Valid prediction for snap_scaffold_20-snap.1739-T1
Valid prediction for Augustus_model.g30801.t1
Couldn't classify 63488, 64030
Sorry, prediction pasa_asmbl_25961.p1 fails validation.
(GTG)	 AG	63488-64030	GT	AGG
(GAA)	 AG	64212-64659	GT	AGG
(CTG)	 AG	64836-65017	GT	AGG
(GTT)	 AG	65250-65387	GT	AGG
(GCT)	 AG	65556-65624	GT	AGG
(GTG)	 AG	65744-65802	GT	CGG
(GCT)	 AG	67744-67808	GT	TGG
(TGC)	 AG	67924-68550	GT	AGG
(ATA)	 AG	68809-68910	GT	AGG
(TGA)	 AG	69194-69271	GT	TGG
(GTG)	 AG	69470-69543	GT	TGG
(GAC)	 AG	69698-70165	GC	GAG
-recovered pasa_asmbl_25961.p1, terminal, 69698, 70165
-recovered pasa_asmbl_25961.p1, internal, 63488, 64030
-recovered pasa_asmbl_25961.p1, internal, 64212, 64659
-recovered pasa_asmbl_25961.p1, internal, 64836, 65017
-recovered pasa_asmbl_25961.p1, internal, 65250, 65387
-recovered pasa_asmbl_25961.p1, internal, 65556, 65624
-recovered pasa_asmbl_25961.p1, internal, 65744, 65802
-recovered pasa_asmbl_25961.p1, internal, 67744, 67808
-recovered pasa_asmbl_25961.p1, internal, 67924, 68550
-recovered pasa_asmbl_25961.p1, internal, 68809, 68910
-recovered pasa_asmbl_25961.p1, internal, 69194, 69271
-recovered pasa_asmbl_25961.p1, internal, 69470, 69543
-recovered pasa_asmbl_25961.p1, internal, 69698, 70165
Valid prediction for CodingQuarry_transcript_30572-T1
Valid prediction for snap_scaffold_20-snap.1741-T1
Valid prediction for snap_scaffold_20-snap.1748-T1
Valid prediction for GlimmerHMM_glimmerT_46409-T1
Valid prediction for snap_scaffold_20-snap.1779-T1
Valid prediction for Augustus_model.g30810.t1
Valid prediction for snap_scaffold_20-snap.1761-T1
Valid prediction for snap_scaffold_20-snap.1755-T1
Valid prediction for snap_scaffold_20-snap.1778-T1
Valid prediction for GlimmerHMM_glimmerT_46401-T1
Valid prediction for snap_scaffold_20-snap.1749-T1
Valid prediction for snap_scaffold_20-snap.1769-T1
Valid prediction for HiQ_model.g30815.t1
Valid prediction for snap_scaffold_20-snap.1744-T1
Valid prediction for Augustus_model.g30809.t1
Valid prediction for Augustus_model.g30819.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 40097, rend_intergenic: 37553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47851, rend_intergenic: 47459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59608, rend_intergenic: 56670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75730, rend_intergenic: 65186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88954, rend_intergenic: 86195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94876, rend_intergenic: 89946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101415, rend_intergenic: 96895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 183773
-exon list size: 375


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.1    
2.4    
2.7    
2.9    
3.2    
3.4    
3.7    
4.0    
4.2    
4.5    
4.8    
5.0    
5.3    
5.6    
5.8    
6.1    
6.4    
6.6    
6.9    
7.2    
7.4    
7.7    
8.0    
8.2    
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8.8    
9.0    
9.3    
9.5    
9.8    
10.1    
10.3    
10.6    
10.9    
11.1    
11.4    
11.7    
11.9    
12.2    
12.5    
12.7    
13.0    
13.3    
13.5    
13.8    
14.1    
14.3    
14.6    
14.9    
15.1    
15.4    
15.6    
15.9    
16.2    
16.4    
16.7    
17.0    
17.2    
17.5    
17.8    
18.0    
18.3    
18.6    
18.8    
19.1    
19.4    
19.6    
19.9    
20.2    
20.4    
20.7    
21.0    
21.2    
21.5    
21.8    
22.0    
22.3    
22.5    
22.8    
23.1    
23.3    
23.6    
23.9    
24.1    
24.4    
24.7    
24.9    
25.2    
25.5    
25.7    
26.0    
26.3    
26.5    
26.8    
27.1    
27.3    
27.6    
27.9    
28.1    
28.4    
28.6    
28.9    
29.2    
29.4    
29.7    
30.0    
30.2    
30.5    
30.8    
31.0    
31.3    
31.6    
31.8    
32.1    
32.4    
32.6    
32.9    
33.2    
33.4    
33.7    
34.0    
34.2    
34.5    
34.7    
35.0    
35.3    
35.5    
35.8    
36.1    
36.3    
36.6    
36.9    
37.1    
37.4    
37.7    
37.9    
38.2    
38.5    
38.7    
39.0    
39.3    
39.5    
39.8    
40.1    
40.3    
40.6    
40.8    
41.1    
41.4    
41.6    
41.9    
42.2    
42.4    
42.7    
43.0    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.8    
45.1    
45.4    
45.6    
45.9    
46.2    
46.4    
46.7    
46.9    
47.2    
47.5    
47.7    
48.0    
48.3    
48.5    
48.8    
49.1    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
50.9    
51.2    
51.5    
51.7    
52.0    
52.3    
52.5    
52.8    
53.1    
53.3    
53.6    
53.8    
54.1    
54.4    
54.6    
54.9    
55.2    
55.4    
55.7    
56.0    
56.2    
56.5    
56.8    
57.0    
57.3    
57.6    
57.8    
58.1    
58.4    
58.6    
58.9    
59.2    
59.4    
59.7    
59.9    
60.2    
60.5    
60.7    
61.0    
61.3    
61.5    
61.8    
62.1    
62.3    
62.6    
62.9    
63.1    
63.4    
63.7    
63.9    
64.2    
64.5    
64.7    
65.0    
65.3    
65.5    
65.8    
66.0    
66.3    
66.6    
66.8    
67.1    
67.4    
67.6    
67.9    
68.2    
68.4    
68.7    
69.0    
69.2    
69.5    
69.8    
70.0    
70.3    
70.6    
70.8    
71.1    
71.4    
71.6    
71.9    
72.1    
72.4    
72.7    
72.9    
73.2    
73.5    
73.7    
74.0    
74.3    
74.5    
74.8    
75.1    
75.3    
75.6    
75.9    
76.1    
76.4    
76.7    
76.9    
77.2    
77.5    
77.7    
78.0    
78.2    
78.5    
78.8    
79.0    
79.3    
79.6    
79.8    
80.1    
80.4    
80.6    
80.9    
81.2    
81.4    
81.7    
82.0    
82.2    
82.5    
82.8    
83.0    
83.3    
83.6    
83.8    
84.1    
84.4    
84.6    
84.9    
85.1    
85.4    
85.7    
85.9    
86.2    
86.5    
86.7    
87.0    
87.3    
87.5    
87.8    
88.1    
88.3    
88.6    
88.9    
89.1    
89.4    
89.7    
89.9    
90.2    
90.5    
90.7    
91.0    
91.2    
91.5    
91.8    
92.0    
92.3    
92.6    
92.8    
93.1    
93.4    
93.6    
93.9    
94.2    
94.4    
94.7    
95.0    
95.2    
95.5    
95.8    
96.0    
96.3    
96.6    
96.8    
97.1    
97.3    
97.6    
97.9    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 40097, rend_intergenic: 37553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47851, rend_intergenic: 47459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59608, rend_intergenic: 56670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75730, rend_intergenic: 65186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88954, rend_intergenic: 86195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94876, rend_intergenic: 89946  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101415, rend_intergenic: 96895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support