-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_7450560-7644715

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.1650-T1
Valid prediction for snap_scaffold_20-snap.1652-T1
Valid prediction for GlimmerHMM_glimmerT_46318-T1
Valid prediction for GlimmerHMM_glimmerT_46307-T1
Valid prediction for snap_scaffold_20-snap.1622-T1
Valid prediction for snap_scaffold_20-snap.1657-T1
Valid prediction for Augustus_model.g30761.t1
Valid prediction for GlimmerHMM_glimmerT_46329-T1
Valid prediction for GlimmerHMM_glimmerT_46319-T1
Valid prediction for snap_scaffold_20-snap.1628-T1
Valid prediction for Augustus_model.g30745.t1
Valid prediction for snap_scaffold_20-snap.1631-T1
Valid prediction for GlimmerHMM_glimmerT_46317-T1
Valid prediction for GlimmerHMM_glimmerT_46324-T1
Valid prediction for snap_scaffold_20-snap.1638-T1
Valid prediction for GlimmerHMM_glimmerT_46310-T1
Valid prediction for snap_scaffold_20-snap.1637-T1
Valid prediction for GlimmerHMM_glimmerT_46302-T1
Valid prediction for snap_scaffold_20-snap.1646-T1
Valid prediction for snap_scaffold_20-snap.1658-T1
Valid prediction for snap_scaffold_20-snap.1659-T1
Valid prediction for GlimmerHMM_glimmerT_46322-T1
Valid prediction for GlimmerHMM_glimmerT_46303-T1
Valid prediction for snap_scaffold_20-snap.1647-T1
Valid prediction for Augustus_model.g30756.t1
Valid prediction for Augustus_model.g30759.t1
Valid prediction for snap_scaffold_20-snap.1648-T1
Valid prediction for GlimmerHMM_glimmerT_46306-T1
Valid prediction for snap_scaffold_20-snap.1643-T1
Valid prediction for snap_scaffold_20-snap.1624-T1
Valid prediction for snap_scaffold_20-snap.1649-T1
Valid prediction for snap_scaffold_20-snap.1655-T1
Valid prediction for snap_scaffold_20-snap.1635-T1
Valid prediction for GlimmerHMM_glimmerT_46305-T1
Couldn't classify 143256, 143347
Sorry, prediction pasa_asmbl_26722.p1 fails validation.
(ATG)	 AT	137855-137877	GT	TGG
(GTT)	 AG	138538-138637	GT	AGG
(ATC)	 AG	138738-138832	GT	ATG
(AAT)	 AG	139110-139220	GT	AGG
(GTC)	 AG	141986-142116	GT	AGG
(TCC)	 AG	143256-143347	GG	ACG
-recovered pasa_asmbl_26722.p1, initial, 137855, 137877
-recovered pasa_asmbl_26722.p1, internal, 138538, 138637
-recovered pasa_asmbl_26722.p1, internal, 138738, 138832
-recovered pasa_asmbl_26722.p1, internal, 139110, 139220
-recovered pasa_asmbl_26722.p1, internal, 141986, 142116
Valid prediction for Augustus_model.g30752.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g30753.t1
Valid prediction for GlimmerHMM_glimmerT_46311-T1
Valid prediction for GlimmerHMM_glimmerT_46326-T1
Valid prediction for snap_scaffold_20-snap.1627-T1
Valid prediction for GlimmerHMM_glimmerT_46314-T1
Couldn't classify 162317, 162387
Sorry, prediction pasa_asmbl_26289.p2 fails validation.
(TGG)	 AC	162317-162387	GT	AGG
(TTG)	 AG	163389-163511	GT	AGG
(GTC)	 AG	164511-164685	GT	AGG
(GTG)	 AG	164944-165123	TC	AAT
-recovered pasa_asmbl_26289.p2, terminal, 164944, 165123
-recovered pasa_asmbl_26289.p2, internal, 163389, 163511
-recovered pasa_asmbl_26289.p2, internal, 164511, 164685
Valid prediction for snap_scaffold_20-snap.1626-T1
Valid prediction for GlimmerHMM_glimmerT_46316-T1
Valid prediction for GlimmerHMM_glimmerT_46304-T1
Valid prediction for snap_scaffold_20-snap.1660-T1
Valid prediction for snap_scaffold_20-snap.1633-T1
Valid prediction for GlimmerHMM_glimmerT_46300-T1
Valid prediction for GlimmerHMM_glimmerT_46327-T1
Valid prediction for snap_scaffold_20-snap.1618-T1
Valid prediction for GlimmerHMM_glimmerT_46321-T1
Valid prediction for Augustus_model.g30751.t1
Valid prediction for Augustus_model.g30748.t1
Valid prediction for Augustus_model.g30744.t1
Valid prediction for HiQ_model.g30741.t1
Valid prediction for snap_scaffold_20-snap.1621-T1
Valid prediction for snap_scaffold_20-snap.1644-T1
Valid prediction for snap_scaffold_20-snap.1619-T1
Valid prediction for Augustus_model.g30755.t1
Valid prediction for snap_scaffold_20-snap.1630-T1
Valid prediction for snap_scaffold_20-snap.1616-T1
Valid prediction for HiQ_model.g30743.t1
Valid prediction for snap_scaffold_20-snap.1641-T1
Valid prediction for GlimmerHMM_glimmerT_46299-T1
Valid prediction for Augustus_model.g30749.t1
Valid prediction for Augustus_model.g30760.t1
Valid prediction for snap_scaffold_20-snap.1640-T1
Valid prediction for snap_scaffold_20-snap.1620-T1
Valid prediction for Augustus_model.g30758.t1
Valid prediction for snap_scaffold_20-snap.1625-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.1634-T1
Valid prediction for Augustus_model.g30757.t1
Valid prediction for Augustus_model.g30746.t1
Valid prediction for Augustus_model.g30762.t1
Valid prediction for GlimmerHMM_glimmerT_46309-T1
Valid prediction for snap_scaffold_20-snap.1654-T1
Valid prediction for snap_scaffold_20-snap.1645-T1
Valid prediction for Augustus_model.g30754.t1
Valid prediction for GlimmerHMM_glimmerT_46308-T1
Valid prediction for Augustus_model.g30747.t1
Valid prediction for snap_scaffold_20-snap.1623-T1
Valid prediction for GlimmerHMM_glimmerT_46328-T1
Valid prediction for snap_scaffold_20-snap.1617-T1
Valid prediction for GlimmerHMM_glimmerT_46325-T1
Valid prediction for pasa_asmbl_25905.p1
Valid prediction for Augustus_model.g30750.t1
Valid prediction for GlimmerHMM_glimmerT_46312-T1
Valid prediction for GlimmerHMM_glimmerT_46315-T1
Valid prediction for CodingQuarry_transcript_30553-T1
Valid prediction for HiQ_model.g30740.t1
Valid prediction for GlimmerHMM_glimmerT_46313-T1
Valid prediction for snap_scaffold_20-snap.1656-T1
Valid prediction for snap_scaffold_20-snap.1615-T1
Valid prediction for snap_scaffold_20-snap.1632-T1
Valid prediction for snap_scaffold_20-snap.1629-T1
Valid prediction for GlimmerHMM_glimmerT_46320-T1
Valid prediction for snap_scaffold_20-snap.1651-T1
Valid prediction for GlimmerHMM_glimmerT_46323-T1
Valid prediction for pasa_asmbl_25902.p1
Valid prediction for GlimmerHMM_glimmerT_46301-T1
Valid prediction for snap_scaffold_20-snap.1636-T1
Valid prediction for HiQ_model.g30742.t1
Valid prediction for CodingQuarry_transcript_30554-T1
Valid prediction for snap_scaffold_20-snap.1642-T1
Valid prediction for snap_scaffold_20-snap.1653-T1
Couldn't classify 176790, 176968
Sorry, prediction pasa_asmbl_25904.p1 fails validation.
(TGT)	 TC	176790-176968	GT	AGG
(GGT)	 AG	178384-178523	GT	TGG
(GTG)	 AG	179199-179299	GT	GGG
(GAT)	 AG	179415-179442	GT	TGG
(ATG)	 AG	179650-179804	AC	GAA
-recovered pasa_asmbl_25904.p1, terminal, 179650, 179804
-recovered pasa_asmbl_25904.p1, internal, 178384, 178523
-recovered pasa_asmbl_25904.p1, internal, 179199, 179299
-recovered pasa_asmbl_25904.p1, internal, 179415, 179442
Valid prediction for snap_scaffold_20-snap.1639-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 60928, rend_intergenic: 56738  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64396, rend_intergenic: 61547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86429, rend_intergenic: 75175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89897, rend_intergenic: 87967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121209, rend_intergenic: 112774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171232, rend_intergenic: 170276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177057, rend_intergenic: 173786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183236, rend_intergenic: 181653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194156
-exon list size: 379


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.6    
1.8    
2.1    
2.4    
2.6    
2.9    
3.1    
3.4    
3.7    
3.9    
4.2    
4.5    
4.7    
5.0    
5.2    
5.5    
5.8    
6.0    
6.3    
6.6    
6.8    
7.1    
7.3    
7.6    
7.9    
8.1    
8.4    
8.7    
8.9    
9.2    
9.4    
9.7    
10.0    
10.2    
10.5    
10.8    
11.0    
11.3    
11.5    
11.8    
12.1    
12.3    
12.6    
12.9    
13.1    
13.4    
13.6    
13.9    
14.2    
14.4    
14.7    
15.0    
15.2    
15.5    
15.7    
16.0    
16.3    
16.5    
16.8    
17.1    
17.3    
17.6    
17.8    
18.1    
18.4    
18.6    
18.9    
19.2    
19.4    
19.7    
19.9    
20.2    
20.5    
20.7    
21.0    
21.3    
21.5    
21.8    
22.0    
22.3    
22.6    
22.8    
23.1    
23.4    
23.6    
23.9    
24.1    
24.4    
24.7    
24.9    
25.2    
25.5    
25.7    
26.0    
26.2    
26.5    
26.8    
27.0    
27.3    
27.6    
27.8    
28.1    
28.3    
28.6    
28.9    
29.1    
29.4    
29.7    
29.9    
30.2    
30.4    
30.7    
31.0    
31.2    
31.5    
31.8    
32.0    
32.3    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.1    
34.4    
34.6    
34.9    
35.2    
35.4    
35.7    
36.0    
36.2    
36.5    
36.7    
37.0    
37.3    
37.5    
37.8    
38.1    
38.3    
38.6    
38.8    
39.1    
39.4    
39.6    
39.9    
40.2    
40.4    
40.7    
40.9    
41.2    
41.5    
41.7    
42.0    
42.3    
42.5    
42.8    
43.0    
43.3    
43.6    
43.8    
44.1    
44.4    
44.6    
44.9    
45.1    
45.4    
45.7    
45.9    
46.2    
46.5    
46.7    
47.0    
47.2    
47.5    
47.8    
48.0    
48.3    
48.6    
48.8    
49.1    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
50.9    
51.2    
51.4    
51.7    
52.0    
52.2    
52.5    
52.8    
53.0    
53.3    
53.5    
53.8    
54.1    
54.3    
54.6    
54.9    
55.1    
55.4    
55.6    
55.9    
56.2    
56.4    
56.7    
57.0    
57.2    
57.5    
57.7    
58.0    
58.3    
58.5    
58.8    
59.1    
59.3    
59.6    
59.8    
60.1    
60.4    
60.6    
60.9    
61.2    
61.4    
61.7    
61.9    
62.2    
62.5    
62.7    
63.0    
63.3    
63.5    
63.8    
64.0    
64.3    
64.6    
64.8    
65.1    
65.4    
65.6    
65.9    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.7    
68.0    
68.2    
68.5    
68.8    
69.0    
69.3    
69.6    
69.8    
70.1    
70.3    
70.6    
70.9    
71.1    
71.4    
71.7    
71.9    
72.2    
72.4    
72.7    
73.0    
73.2    
73.5    
73.8    
74.0    
74.3    
74.5    
74.8    
75.1    
75.3    
75.6    
75.9    
76.1    
76.4    
76.6    
76.9    
77.2    
77.4    
77.7    
78.0    
78.2    
78.5    
78.7    
79.0    
79.3    
79.5    
79.8    
80.1    
80.3    
80.6    
80.8    
81.1    
81.4    
81.6    
81.9    
82.2    
82.4    
82.7    
82.9    
83.2    
83.5    
83.7    
84.0    
84.3    
84.5    
84.8    
85.0    
85.3    
85.6    
85.8    
86.1    
86.4    
86.6    
86.9    
87.1    
87.4    
87.7    
87.9    
88.2    
88.5    
88.7    
89.0    
89.2    
89.5    
89.8    
90.0    
90.3    
90.6    
90.8    
91.1    
91.3    
91.6    
91.9    
92.1    
92.4    
92.7    
92.9    
93.2    
93.4    
93.7    
94.0    
94.2    
94.5    
94.8    
95.0    
95.3    
95.5    
95.8    
96.1    
96.3    
96.6    
96.9    
97.1    
97.4    
97.6    
97.9    
98.2    
98.4    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 60928, rend_intergenic: 56738  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64396, rend_intergenic: 61547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86429, rend_intergenic: 75175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89897, rend_intergenic: 87967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121209, rend_intergenic: 112774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171232, rend_intergenic: 170276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177057, rend_intergenic: 173786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183236, rend_intergenic: 181653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support