-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_6383680-6529999

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.1379-T1
Valid prediction for Augustus_model.g30625.t1
Valid prediction for Augustus_model.g30623.t1
Valid prediction for GlimmerHMM_glimmerT_46141-T1
Valid prediction for snap_scaffold_20-snap.1388-T1
Valid prediction for Augustus_model.g30629.t1
Valid prediction for snap_scaffold_20-snap.1402-T1
Valid prediction for snap_scaffold_20-snap.1394-T1
Valid prediction for Augustus_model.g30630.t1
Valid prediction for GlimmerHMM_glimmerT_46154-T1
Couldn't classify 109200, 109970
Sorry, prediction pasa_asmbl_26659.p1 fails validation.
(GAA)	 AA	109200-109970	GT	AAG
Valid prediction for snap_scaffold_20-snap.1400-T1
Valid prediction for snap_scaffold_20-snap.1377-T1
Valid prediction for GlimmerHMM_glimmerT_46159-T1
Valid prediction for snap_scaffold_20-snap.1380-T1
Valid prediction for snap_scaffold_20-snap.1397-T1
Valid prediction for snap_scaffold_20-snap.1399-T1
Valid prediction for Augustus_model.g30622.t1
Valid prediction for snap_scaffold_20-snap.1384-T1
Valid prediction for snap_scaffold_20-snap.1404-T1
Valid prediction for GlimmerHMM_glimmerT_46155-T1
Valid prediction for GlimmerHMM_glimmerT_46142-T1
Valid prediction for Augustus_model.g30627.t1
Valid prediction for GlimmerHMM_glimmerT_46149-T1
Valid prediction for GlimmerHMM_glimmerT_46148-T1
Valid prediction for Augustus_model.g30628.t1
Valid prediction for GlimmerHMM_glimmerT_46146-T1
Valid prediction for snap_scaffold_20-snap.1398-T1
Valid prediction for GlimmerHMM_glimmerT_46157-T1
Valid prediction for GlimmerHMM_glimmerT_46145-T1
Valid prediction for snap_scaffold_20-snap.1405-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_46158-T1
Valid prediction for snap_scaffold_20-snap.1392-T1
Valid prediction for snap_scaffold_20-snap.1396-T1
Valid prediction for GlimmerHMM_glimmerT_46151-T1
Valid prediction for snap_scaffold_20-snap.1381-T1
Valid prediction for pasa_asmbl_25838.p1
Valid prediction for snap_scaffold_20-snap.1378-T1
Valid prediction for snap_scaffold_20-snap.1390-T1
Valid prediction for Augustus_model.g30631.t1
Valid prediction for snap_scaffold_20-snap.1393-T1
Valid prediction for snap_scaffold_20-snap.1401-T1
Valid prediction for snap_scaffold_20-snap.1406-T1
Valid prediction for CodingQuarry_transcript_30532-T1
Valid prediction for CodingQuarry_transcript_30533-T1
Valid prediction for snap_scaffold_20-snap.1383-T1
Valid prediction for snap_scaffold_20-snap.1395-T1
Valid prediction for GlimmerHMM_glimmerT_46161-T1
Valid prediction for GlimmerHMM_glimmerT_46150-T1
Valid prediction for GlimmerHMM_glimmerT_46152-T1
Valid prediction for GlimmerHMM_glimmerT_46160-T1
Valid prediction for GlimmerHMM_glimmerT_46153-T1
Valid prediction for GlimmerHMM_glimmerT_46144-T1
Valid prediction for snap_scaffold_20-snap.1389-T1
Valid prediction for snap_scaffold_20-snap.1386-T1
Valid prediction for GlimmerHMM_glimmerT_46147-T1
Valid prediction for Augustus_model.g30624.t1
Valid prediction for Augustus_model.g30626.t1
Valid prediction for GlimmerHMM_glimmerT_46143-T1
Valid prediction for snap_scaffold_20-snap.1387-T1
Valid prediction for snap_scaffold_20-snap.1391-T1
Valid prediction for GlimmerHMM_glimmerT_46156-T1
Valid prediction for snap_scaffold_20-snap.1382-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.1385-T1
Valid prediction for snap_scaffold_20-snap.1403-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9603, rend_intergenic: 8709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22774, rend_intergenic: 13156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69606, rend_intergenic: 65282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116326, rend_intergenic: 107880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 146320
-exon list size: 205


building trellis

0.5    
1.0    
1.4    
1.9    
2.4    
2.9    
3.4    
3.9    
4.3    
4.8    
5.3    
5.8    
6.3    
6.8    
7.2    
7.7    
8.2    
8.7    
9.2    
9.7    
10.1    
10.6    
11.1    
11.6    
12.1    
12.6    
13.0    
13.5    
14.0    
14.5    
15.0    
15.5    
15.9    
16.4    
16.9    
17.4    
17.9    
18.4    
18.8    
19.3    
19.8    
20.3    
20.8    
21.3    
21.7    
22.2    
22.7    
23.2    
23.7    
24.2    
24.6    
25.1    
25.6    
26.1    
26.6    
27.1    
27.5    
28.0    
28.5    
29.0    
29.5    
30.0    
30.4    
30.9    
31.4    
31.9    
32.4    
32.9    
33.3    
33.8    
34.3    
34.8    
35.3    
35.7    
36.2    
36.7    
37.2    
37.7    
38.2    
38.6    
39.1    
39.6    
40.1    
40.6    
41.1    
41.5    
42.0    
42.5    
43.0    
43.5    
44.0    
44.4    
44.9    
45.4    
45.9    
46.4    
46.9    
47.3    
47.8    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.7    
53.1    
53.6    
54.1    
54.6    
55.1    
55.6    
56.0    
56.5    
57.0    
57.5    
58.0    
58.5    
58.9    
59.4    
59.9    
60.4    
60.9    
61.4    
61.8    
62.3    
62.8    
63.3    
63.8    
64.3    
64.7    
65.2    
65.7    
66.2    
66.7    
67.1    
67.6    
68.1    
68.6    
69.1    
69.6    
70.0    
70.5    
71.0    
71.5    
72.0    
72.5    
72.9    
73.4    
73.9    
74.4    
74.9    
75.4    
75.8    
76.3    
76.8    
77.3    
77.8    
78.3    
78.7    
79.2    
79.7    
80.2    
80.7    
81.2    
81.6    
82.1    
82.6    
83.1    
83.6    
84.1    
84.5    
85.0    
85.5    
86.0    
86.5    
87.0    
87.4    
87.9    
88.4    
88.9    
89.4    
89.9    
90.3    
90.8    
91.3    
91.8    
92.3    
92.8    
93.2    
93.7    
94.2    
94.7    
95.2    
95.7    
96.1    
96.6    
97.1    
97.6    
98.1    
98.6    
99.0    
99.5    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 9603, rend_intergenic: 8709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22774, rend_intergenic: 13156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69606, rend_intergenic: 65282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116326, rend_intergenic: 107880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support