-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_5721572-6000724

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.1297-T1
Valid prediction for snap_scaffold_20-snap.1252-T1
Valid prediction for snap_scaffold_20-snap.1242-T1
Valid prediction for snap_scaffold_20-snap.1229-T1
Couldn't classify 121614, 121720
Sorry, prediction CodingQuarry_transcript_30514-T1 fails validation.
(ATG)	 TC	118250-118314	GT	AAG
(AGA)	 AG	118908-119004	GT	AGG
(AAC)	 AG	119271-119423	GT	AGG
(TTC)	 AG	119581-119727	GT	AGG
(GGA)	 AG	120604-120642	GT	AGG
(GCG)	 AG	120889-121002	GT	AGG
(TTC)	 AG	121113-121371	GT	CAG
(TAG)	 TG	121614-121720	GT	GGG
(GCT)	 AG	121841-121921	AA	AGA
-recovered CodingQuarry_transcript_30514-T1, initial, 118250, 118314
-recovered CodingQuarry_transcript_30514-T1, terminal, 121841, 121921
-recovered CodingQuarry_transcript_30514-T1, internal, 118908, 119004
-recovered CodingQuarry_transcript_30514-T1, internal, 119271, 119423
-recovered CodingQuarry_transcript_30514-T1, internal, 119581, 119727
-recovered CodingQuarry_transcript_30514-T1, internal, 120604, 120642
-recovered CodingQuarry_transcript_30514-T1, internal, 120889, 121002
-recovered CodingQuarry_transcript_30514-T1, internal, 121113, 121371
Valid prediction for snap_scaffold_20-snap.1249-T1
Valid prediction for snap_scaffold_20-snap.1285-T1
Valid prediction for GlimmerHMM_glimmerT_46055-T1
Valid prediction for snap_scaffold_20-snap.1271-T1
Valid prediction for GlimmerHMM_glimmerT_46086-T1
Valid prediction for snap_scaffold_20-snap.1236-T1
Valid prediction for HiQ_model.g30567.t1
Valid prediction for pasa_asmbl_26636.p1
Valid prediction for snap_scaffold_20-snap.1287-T1
Valid prediction for HiQ_model.g30580.t1
Valid prediction for GlimmerHMM_glimmerT_46051-T1
Valid prediction for GlimmerHMM_glimmerT_46061-T1
Valid prediction for GlimmerHMM_glimmerT_46045-T1
Valid prediction for pasa_asmbl_26637.p1
Valid prediction for GlimmerHMM_glimmerT_46074-T1
Valid prediction for snap_scaffold_20-snap.1276-T1
Valid prediction for CodingQuarry_transcript_30520-T1
Valid prediction for pasa_asmbl_26632.p1
Valid prediction for snap_scaffold_20-snap.1250-T1
Couldn't classify 185457, 185496
Sorry, prediction pasa_asmbl_26642.p1 fails validation.
(ATG)	 TA	179318-179526	GT	AGG
(GAG)	 AG	179912-180083	GT	AGG
(GCG)	 AG	180181-180311	GT	GAG
(TTT)	 AG	180811-180929	GT	AGG
(GTG)	 AG	181582-181741	GT	AAG
(ACT)	 AG	181909-182053	GT	GGG
(GGT)	 AG	182447-182521	GT	ACG
(TGG)	 AG	182788-182867	GT	AGG
(AAG)	 AG	183434-183546	GT	AGG
(AGA)	 AG	183781-183842	GT	AGG
(ACT)	 AG	184088-184218	GT	AAG
(GTT)	 AG	184446-184533	GT	AGG
(GGC)	 AG	184664-184778	GT	AGG
(ACA)	 AG	185012-185127	GT	AGG
(AAT)	 AG	185298-185353	GT	AGG
(TCA)	 AG	185457-185496	GT	TGG
-recovered pasa_asmbl_26642.p1, initial, 179318, 179526
add_exon() Sorry, pasa_asmbl_26642.p1 180181-180311-terminal-2 is invalid.
-recovered pasa_asmbl_26642.p1, terminal, 180181, 180311
-recovered pasa_asmbl_26642.p1, internal, 179912, 180083
-recovered pasa_asmbl_26642.p1, internal, 180181, 180311
-recovered pasa_asmbl_26642.p1, internal, 180811, 180929
-recovered pasa_asmbl_26642.p1, internal, 181582, 181741
-recovered pasa_asmbl_26642.p1, internal, 181909, 182053
-recovered pasa_asmbl_26642.p1, internal, 182447, 182521
-recovered pasa_asmbl_26642.p1, internal, 182788, 182867
-recovered pasa_asmbl_26642.p1, internal, 183434, 183546
-recovered pasa_asmbl_26642.p1, internal, 183781, 183842
-recovered pasa_asmbl_26642.p1, internal, 184088, 184218
-recovered pasa_asmbl_26642.p1, internal, 184446, 184533
-recovered pasa_asmbl_26642.p1, internal, 184664, 184778
-recovered pasa_asmbl_26642.p1, internal, 185012, 185127
-recovered pasa_asmbl_26642.p1, internal, 185298, 185353
-recovered pasa_asmbl_26642.p1, internal, 185457, 185496
Valid prediction for Augustus_model.g30562.t1
Valid prediction for snap_scaffold_20-snap.1262-T1
Valid prediction for GlimmerHMM_glimmerT_46063-T1
Couldn't classify 162415, 162991
Sorry, prediction pasa_asmbl_26640.p1 fails validation.
(CCT)	 CT	162415-162991	GT	AGG
(AAC)	 AG	163091-163177	GT	TGG
(TTC)	 AG	163340-163740	CT	AGC
-recovered pasa_asmbl_26640.p1, terminal, 163340, 163740
-recovered pasa_asmbl_26640.p1, internal, 163091, 163177
Valid prediction for GlimmerHMM_glimmerT_46064-T1
Valid prediction for CodingQuarry_transcript_30512-T1
Valid prediction for GlimmerHMM_glimmerT_46070-T1
Valid prediction for GlimmerHMM_glimmerT_46069-T1
Valid prediction for snap_scaffold_20-snap.1267-T1
Valid prediction for GlimmerHMM_glimmerT_46053-T1
Valid prediction for snap_scaffold_20-snap.1264-T1
Valid prediction for CodingQuarry_transcript_30519-T1
Valid prediction for snap_scaffold_20-snap.1289-T1
Valid prediction for Augustus_model.g30566.t1
Valid prediction for Augustus_model.g30564.t1
Valid prediction for GlimmerHMM_glimmerT_46072-T1
Valid prediction for snap_scaffold_20-snap.1279-T1
Valid prediction for snap_scaffold_20-snap.1227-T1
Valid prediction for GlimmerHMM_glimmerT_46062-T1
Valid prediction for GlimmerHMM_glimmerT_46057-T1
Valid prediction for snap_scaffold_20-snap.1268-T1
Valid prediction for Augustus_model.g30575.t1
Valid prediction for snap_scaffold_20-snap.1270-T1
Valid prediction for Augustus_model.g30573.t1
Valid prediction for GlimmerHMM_glimmerT_46068-T1
Valid prediction for snap_scaffold_20-snap.1238-T1
Valid prediction for snap_scaffold_20-snap.1247-T1
Valid prediction for Augustus_model.g30561.t1
Valid prediction for GlimmerHMM_glimmerT_46050-T1
Valid prediction for GlimmerHMM_glimmerT_46083-T1
Valid prediction for Augustus_model.g30577.t1
Valid prediction for HiQ_model.g30569.t1
Valid prediction for snap_scaffold_20-snap.1293-T1
Valid prediction for GlimmerHMM_glimmerT_46049-T1
Valid prediction for GlimmerHMM_glimmerT_46085-T1
Valid prediction for snap_scaffold_20-snap.1230-T1
Valid prediction for snap_scaffold_20-snap.1292-T1
Valid prediction for snap_scaffold_20-snap.1266-T1
Valid prediction for snap_scaffold_20-snap.1234-T1
Valid prediction for Augustus_model.g30563.t1
Valid prediction for snap_scaffold_20-snap.1274-T1
Valid prediction for CodingQuarry_transcript_30513-T1
Couldn't classify 159814, 160143
Sorry, prediction pasa_asmbl_26639.p1 fails validation.
(AAT)	 CC	159814-160143	GG	GGG
Valid prediction for Augustus_model.g30559.t1
Valid prediction for snap_scaffold_20-snap.1296-T1
Valid prediction for HiQ_model.g30583.t1
Valid prediction for snap_scaffold_20-snap.1255-T1
Valid prediction for snap_scaffold_20-snap.1243-T1
Valid prediction for Augustus_model.g30560.t1
Valid prediction for GlimmerHMM_glimmerT_46066-T1
Valid prediction for snap_scaffold_20-snap.1257-T1
Valid prediction for snap_scaffold_20-snap.1246-T1
Valid prediction for GlimmerHMM_glimmerT_46039-T1
Valid prediction for snap_scaffold_20-snap.1253-T1
Valid prediction for CodingQuarry_transcript_30525-T1
Valid prediction for GlimmerHMM_glimmerT_46077-T1
Valid prediction for GlimmerHMM_glimmerT_46046-T1
Valid prediction for snap_scaffold_20-snap.1263-T1
Valid prediction for Augustus_model.g30574.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_20-snap.1269-T1
Valid prediction for Augustus_model.g30568.t1
Valid prediction for snap_scaffold_20-snap.1259-T1
Valid prediction for GlimmerHMM_glimmerT_46080-T1
Valid prediction for CodingQuarry_transcript_30524-T1
Valid prediction for Augustus_model.g30581.t1
Valid prediction for Augustus_model.g30589.t1
Valid prediction for snap_scaffold_20-snap.1286-T1
Valid prediction for snap_scaffold_20-snap.1275-T1
Valid prediction for Augustus_model.g30578.t1
Valid prediction for snap_scaffold_20-snap.1248-T1
Valid prediction for GlimmerHMM_glimmerT_46065-T1
Valid prediction for snap_scaffold_20-snap.1282-T1
Valid prediction for snap_scaffold_20-snap.1288-T1
Valid prediction for snap_scaffold_20-snap.1254-T1
Valid prediction for snap_scaffold_20-snap.1258-T1
Valid prediction for GlimmerHMM_glimmerT_46081-T1
Valid prediction for CodingQuarry_transcript_30515-T1
Valid prediction for CodingQuarry_transcript_30527-T1
Couldn't classify 55920, 56217
Couldn't classify 57854, 58059
Sorry, prediction pasa_asmbl_25799.p1 fails validation.
(CCT)	 AC	55920-56217	GT	TTG
(ATG)	 AG	57854-58059	GG	CTG
Valid prediction for GlimmerHMM_glimmerT_46058-T1
Valid prediction for Augustus_model.g30565.t1
Valid prediction for GlimmerHMM_glimmerT_46043-T1
Valid prediction for GlimmerHMM_glimmerT_46042-T1
Couldn't classify 102325, 102483
Couldn't classify 102893, 103090
Sorry, prediction pasa_asmbl_25784.p1 fails validation.
(CAA)	 GG	102325-102483	GT	AGG
(GCG)	 AG	102623-102754	GT	AGG
(GAA)	 AG	102893-103090	AG	GAA
-recovered pasa_asmbl_25784.p1, internal, 102623, 102754
Valid prediction for snap_scaffold_20-snap.1265-T1
Valid prediction for CodingQuarry_transcript_30526-T1
Valid prediction for pasa_asmbl_25797.p1
Valid prediction for Augustus_model.g30588.t1
Valid prediction for snap_scaffold_20-snap.1260-T1
Valid prediction for GlimmerHMM_glimmerT_46075-T1
Valid prediction for snap_scaffold_20-snap.1232-T1
Valid prediction for Augustus_model.g30572.t1
Valid prediction for GlimmerHMM_glimmerT_46060-T1
Valid prediction for snap_scaffold_20-snap.1277-T1
Valid prediction for Augustus_model.g30586.t1
Valid prediction for snap_scaffold_20-snap.1241-T1
Valid prediction for GlimmerHMM_glimmerT_46044-T1
Valid prediction for GlimmerHMM_glimmerT_46073-T1
Valid prediction for snap_scaffold_20-snap.1233-T1
Valid prediction for GlimmerHMM_glimmerT_46079-T1
Valid prediction for GlimmerHMM_glimmerT_46052-T1
Valid prediction for GlimmerHMM_glimmerT_46078-T1
Valid prediction for HiQ_model.g30584.t1
Valid prediction for HiQ_model.g30571.t1
Valid prediction for Augustus_model.g30582.t1
Valid prediction for snap_scaffold_20-snap.1235-T1
Valid prediction for HiQ_model.g30585.t1
Couldn't classify 17786, 17794
Couldn't classify 25108, 25214
Sorry, prediction pasa_asmbl_25812.p1 fails validation.
(CCC)	 GG	17786-17794	GT	AGG
(GCT)	 AG	18106-18216	GT	AGG
(ATC)	 AG	20981-21086	GT	AGG
(GCG)	 AG	22529-22643	GT	TGG
(CTT)	 AG	23176-23300	GT	AGG
(ATG)	 AG	25108-25214	GC	AGG
add_exon() Sorry, pasa_asmbl_25812.p1 25108-25214-initial-1 is invalid.
-recovered pasa_asmbl_25812.p1, initial, 25108, 25214
-recovered pasa_asmbl_25812.p1, internal, 18106, 18216
-recovered pasa_asmbl_25812.p1, internal, 20981, 21086
-recovered pasa_asmbl_25812.p1, internal, 22529, 22643
-recovered pasa_asmbl_25812.p1, internal, 23176, 23300
-recovered pasa_asmbl_25812.p1, internal, 25108, 25214
Couldn't classify 83586, 83775
Sorry, prediction pasa_asmbl_25786.p1 fails validation.
(GAC)	 CA	83586-83775	GT	CGG
(ACC)	 AG	84347-84430	GT	AGG
(GGG)	 AG	85580-85656	GT	AGG
(GTG)	 AG	85821-85884	GT	AAG
(TCG)	 AG	86125-86324	AG	AAA
-recovered pasa_asmbl_25786.p1, terminal, 86125, 86324
-recovered pasa_asmbl_25786.p1, internal, 84347, 84430
-recovered pasa_asmbl_25786.p1, internal, 85580, 85656
-recovered pasa_asmbl_25786.p1, internal, 85821, 85884
Couldn't classify 111654, 111706
Sorry, prediction pasa_asmbl_25782.p1 fails validation.
(TGT)	 CT	111654-111706	GT	ACG
(AAC)	 AG	111857-111998	GT	AGG
(GCC)	 AG	112131-112229	GT	CAG
(GCA)	 AG	112469-112548	GT	AGG
(TAA)	 AG	112647-112724	GT	GCG
(GTA)	 AG	112815-112893	GT	AGG
(GTG)	 AG	113038-113145	GT	AGG
(AAT)	 AG	113290-113331	GT	ATG
(TAC)	 AG	113410-113532	GT	AGG
(GAC)	 AG	113641-113754	GT	AGG
(AAC)	 AG	113839-113871	GT	AGG
(ATT)	 AG	113986-114096	GT	AGG
(GTG)	 AG	114179-114355	GG	AAG
-recovered pasa_asmbl_25782.p1, terminal, 114179, 114355
-recovered pasa_asmbl_25782.p1, internal, 111857, 111998
-recovered pasa_asmbl_25782.p1, internal, 112131, 112229
-recovered pasa_asmbl_25782.p1, internal, 112469, 112548
-recovered pasa_asmbl_25782.p1, internal, 112647, 112724
-recovered pasa_asmbl_25782.p1, internal, 112815, 112893
-recovered pasa_asmbl_25782.p1, internal, 113038, 113145
-recovered pasa_asmbl_25782.p1, internal, 113290, 113331
-recovered pasa_asmbl_25782.p1, internal, 113410, 113532
-recovered pasa_asmbl_25782.p1, internal, 113641, 113754
-recovered pasa_asmbl_25782.p1, internal, 113839, 113871
-recovered pasa_asmbl_25782.p1, internal, 113986, 114096
Valid prediction for snap_scaffold_20-snap.1290-T1
Valid prediction for GlimmerHMM_glimmerT_46082-T1
Valid prediction for snap_scaffold_20-snap.1283-T1
Valid prediction for GlimmerHMM_glimmerT_46059-T1
Valid prediction for snap_scaffold_20-snap.1226-T1
Valid prediction for snap_scaffold_20-snap.1273-T1
Valid prediction for snap_scaffold_20-snap.1239-T1
Valid prediction for GlimmerHMM_glimmerT_46071-T1
Valid prediction for CodingQuarry_transcript_30518-T1
Valid prediction for snap_scaffold_20-snap.1245-T1
Valid prediction for Augustus_model.g30576.t1
Valid prediction for pasa_asmbl_25796.p1
Valid prediction for GlimmerHMM_glimmerT_46056-T1
Valid prediction for snap_scaffold_20-snap.1251-T1
Valid prediction for pasa_asmbl_25790.p1
Valid prediction for HiQ_model.g30579.t1
Valid prediction for CodingQuarry_transcript_30516-T1
Valid prediction for CodingQuarry_transcript_30522-T1
Couldn't classify 4958, 5065
Couldn't classify 5723, 5844
Sorry, prediction pasa_asmbl_25813.p1 fails validation.
(TTC)	 CG	4958-5065	GT	AGG
(GAG)	 AG	5368-5488	GT	AGG
(AGC)	 AG	5723-5844	CT	ACC
-recovered pasa_asmbl_25813.p1, internal, 5368, 5488
Valid prediction for GlimmerHMM_glimmerT_46047-T1
Valid prediction for snap_scaffold_20-snap.1272-T1
Valid prediction for snap_scaffold_20-snap.1278-T1
Valid prediction for Augustus_model.g30556.t1
Valid prediction for snap_scaffold_20-snap.1228-T1
Couldn't classify 38748, 38847
Couldn't classify 41952, 42220
Sorry, prediction pasa_asmbl_25810.p1 fails validation.
(CCA)	 TC	38748-38847	GT	CTG
(GTC)	 AG	39000-39023	GT	ATG
(TGT)	 AG	40521-40817	GT	AGG
(GCC)	 AG	41059-41352	GT	AGG
(AGT)	 AG	41467-41745	GT	TGG
(AAA)	 AG	41952-42220	GG	AGG
-recovered pasa_asmbl_25810.p1, internal, 39000, 39023
-recovered pasa_asmbl_25810.p1, internal, 40521, 40817
-recovered pasa_asmbl_25810.p1, internal, 41059, 41352
-recovered pasa_asmbl_25810.p1, internal, 41467, 41745
Couldn't classify 30790, 30837
Sorry, prediction pasa_asmbl_25811.p1 fails validation.
(GTC)	 AC	30790-30837	GT	AGG
(GAC)	 AG	31924-32051	GT	TGG
(TCG)	 AG	33304-33390	GT	AGG
(CGT)	 AG	33839-33955	GT	TGG
(TGG)	 AG	34216-34345	GT	GGG
(CCT)	 AG	35037-35105	CA	AAC
-recovered pasa_asmbl_25811.p1, terminal, 35037, 35105
-recovered pasa_asmbl_25811.p1, internal, 31924, 32051
-recovered pasa_asmbl_25811.p1, internal, 33304, 33390
-recovered pasa_asmbl_25811.p1, internal, 33839, 33955
-recovered pasa_asmbl_25811.p1, internal, 34216, 34345
Valid prediction for snap_scaffold_20-snap.1240-T1
Valid prediction for snap_scaffold_20-snap.1281-T1
Valid prediction for GlimmerHMM_glimmerT_46067-T1
Valid prediction for Augustus_model.g30558.t1
Valid prediction for snap_scaffold_20-snap.1261-T1
Couldn't classify 43329, 43473
Couldn't classify 43745, 44022
Sorry, prediction pasa_asmbl_26234.p1 fails validation.
(GTT)	 AC	43329-43473	GT	AGG
(TGC)	 AG	43745-44022	GG	AGG
Valid prediction for GlimmerHMM_glimmerT_46040-T1
Valid prediction for GlimmerHMM_glimmerT_46054-T1
Valid prediction for pasa_asmbl_25779.p1
Valid prediction for GlimmerHMM_glimmerT_46076-T1
Valid prediction for snap_scaffold_20-snap.1280-T1
Valid prediction for Augustus_model.g30587.t1
Valid prediction for snap_scaffold_20-snap.1291-T1
Valid prediction for snap_scaffold_20-snap.1237-T1
Valid prediction for snap_scaffold_20-snap.1294-T1
Valid prediction for snap_scaffold_20-snap.1284-T1
Valid prediction for GlimmerHMM_glimmerT_46041-T1
Valid prediction for GlimmerHMM_glimmerT_46048-T1
Valid prediction for HiQ_model.g30570.t1
Valid prediction for CodingQuarry_transcript_30523-T1
Valid prediction for Augustus_model.g30557.t1
Valid prediction for snap_scaffold_20-snap.1256-T1
Valid prediction for snap_scaffold_20-snap.1231-T1
Valid prediction for GlimmerHMM_glimmerT_46084-T1
Valid prediction for pasa_asmbl_25780.p1
Couldn't classify 167771, 167872
Sorry, prediction pasa_asmbl_25777.p1 fails validation.
(ATG)	 AG	165803-165920	GT	ATG
(TTT)	 AG	166048-166144	GT	AGG
(GGC)	 AG	166358-166413	GT	AGG
(ATG)	 AG	166621-166750	GT	AAG
(AAG)	 AG	166990-167032	GT	AGG
(TCC)	 AG	167220-167318	GT	GGG
(GTG)	 AG	167567-167647	GT	GAG
(ACT)	 AG	167771-167872	CA	GCC
-recovered pasa_asmbl_25777.p1, initial, 165803, 165920
add_exon() Sorry, pasa_asmbl_25777.p1 166621-166750-initial-1 is invalid.
-recovered pasa_asmbl_25777.p1, initial, 166621, 166750
-recovered pasa_asmbl_25777.p1, internal, 165803, 165920
-recovered pasa_asmbl_25777.p1, internal, 166048, 166144
-recovered pasa_asmbl_25777.p1, internal, 166358, 166413
-recovered pasa_asmbl_25777.p1, internal, 166621, 166750
-recovered pasa_asmbl_25777.p1, internal, 166990, 167032
-recovered pasa_asmbl_25777.p1, internal, 167220, 167318
-recovered pasa_asmbl_25777.p1, internal, 167567, 167647
Valid prediction for snap_scaffold_20-snap.1244-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9268, rend_intergenic: 6099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10171, rend_intergenic: 9373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14417, rend_intergenic: 10433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26035, rend_intergenic: 19901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35309, rend_intergenic: 31345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40926, rend_intergenic: 35526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42747, rend_intergenic: 41691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45586, rend_intergenic: 43163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50322, rend_intergenic: 49317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57851, rend_intergenic: 56155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65323, rend_intergenic: 63007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69104, rend_intergenic: 66830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88596, rend_intergenic: 83560  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100933, rend_intergenic: 97155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123187, rend_intergenic: 119638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135559, rend_intergenic: 133192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147875, rend_intergenic: 145095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198270, rend_intergenic: 194698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223075, rend_intergenic: 218661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243678, rend_intergenic: 227321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 247448, rend_intergenic: 247372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 254080, rend_intergenic: 247631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 264166, rend_intergenic: 254102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 268114, rend_intergenic: 264204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 279153
-exon list size: 654


building trellis

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99.7    
99.8    
-found 49 predictions from path traversal
Error with prediction: snap lend_intergenic: 9268, rend_intergenic: 6099  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10171, rend_intergenic: 9373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14417, rend_intergenic: 10433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26035, rend_intergenic: 19901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35309, rend_intergenic: 31345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40926, rend_intergenic: 35526  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42747, rend_intergenic: 41691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45586, rend_intergenic: 43163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50322, rend_intergenic: 49317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57851, rend_intergenic: 56155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65323, rend_intergenic: 63007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69104, rend_intergenic: 66830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88596, rend_intergenic: 83560  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100933, rend_intergenic: 97155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123187, rend_intergenic: 119638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135559, rend_intergenic: 133192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147875, rend_intergenic: 145095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198270, rend_intergenic: 194698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223075, rend_intergenic: 218661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 243678, rend_intergenic: 227321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 247448, rend_intergenic: 247372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 254080, rend_intergenic: 247631  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 264166, rend_intergenic: 254102  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 268114, rend_intergenic: 264204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 34 predictions persist after filtering for low support