-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_5627158-5727669

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_46019-T1
Valid prediction for Augustus_model.g30552.t1
Valid prediction for GlimmerHMM_glimmerT_46030-T1
Valid prediction for snap_scaffold_20-snap.1211-T1
Valid prediction for Augustus_model.g30555.t1
Valid prediction for snap_scaffold_20-snap.1214-T1
Valid prediction for GlimmerHMM_glimmerT_46032-T1
Valid prediction for GlimmerHMM_glimmerT_46024-T1
Valid prediction for snap_scaffold_20-snap.1207-T1
Valid prediction for snap_scaffold_20-snap.1225-T1
Valid prediction for snap_scaffold_20-snap.1212-T1
Valid prediction for snap_scaffold_20-snap.1215-T1
Valid prediction for GlimmerHMM_glimmerT_46029-T1
Valid prediction for Augustus_model.g30553.t1
Valid prediction for snap_scaffold_20-snap.1224-T1
Valid prediction for GlimmerHMM_glimmerT_46037-T1
Valid prediction for snap_scaffold_20-snap.1218-T1
Valid prediction for snap_scaffold_20-snap.1206-T1
Valid prediction for Augustus_model.g30549.t1
Valid prediction for GlimmerHMM_glimmerT_46026-T1
Valid prediction for GlimmerHMM_glimmerT_46023-T1
Valid prediction for snap_scaffold_20-snap.1219-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_20-snap.1209-T1
Valid prediction for GlimmerHMM_glimmerT_46027-T1
Valid prediction for snap_scaffold_20-snap.1213-T1
Valid prediction for GlimmerHMM_glimmerT_46025-T1
Valid prediction for snap_scaffold_20-snap.1221-T1
Valid prediction for snap_scaffold_20-snap.1217-T1
Valid prediction for snap_scaffold_20-snap.1220-T1
Valid prediction for GlimmerHMM_glimmerT_46034-T1
Valid prediction for snap_scaffold_20-snap.1216-T1
Valid prediction for GlimmerHMM_glimmerT_46022-T1
Valid prediction for GlimmerHMM_glimmerT_46036-T1
Valid prediction for GlimmerHMM_glimmerT_46028-T1
Valid prediction for Augustus_model.g30551.t1
Valid prediction for snap_scaffold_20-snap.1210-T1
Valid prediction for Augustus_model.g30550.t1
Valid prediction for snap_scaffold_20-snap.1223-T1
Valid prediction for GlimmerHMM_glimmerT_46021-T1
Valid prediction for snap_scaffold_20-snap.1205-T1
Valid prediction for GlimmerHMM_glimmerT_46020-T1
Valid prediction for GlimmerHMM_glimmerT_46035-T1
Valid prediction for snap_scaffold_20-snap.1222-T1
Valid prediction for snap_scaffold_20-snap.1208-T1
Valid prediction for GlimmerHMM_glimmerT_46033-T1
Valid prediction for GlimmerHMM_glimmerT_46031-T1
Valid prediction for Augustus_model.g30554.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9821, rend_intergenic: 5653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32965, rend_intergenic: 9924  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33886, rend_intergenic: 33743  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49615, rend_intergenic: 41220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53904, rend_intergenic: 49962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58625, rend_intergenic: 54036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63468, rend_intergenic: 61200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72018, rend_intergenic: 68509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93881, rend_intergenic: 83044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 100512
-exon list size: 185


building trellis

0.5    
1.1    
1.6    
2.1    
2.7    
3.2    
3.7    
4.3    
4.8    
5.3    
5.9    
6.4    
7.0    
7.5    
8.0    
8.6    
9.1    
9.6    
10.2    
10.7    
11.2    
11.8    
12.3    
12.8    
13.4    
13.9    
14.4    
15.0    
15.5    
16.0    
16.6    
17.1    
17.6    
18.2    
18.7    
19.3    
19.8    
20.3    
20.9    
21.4    
21.9    
22.5    
23.0    
23.5    
24.1    
24.6    
25.1    
25.7    
26.2    
26.7    
27.3    
27.8    
28.3    
28.9    
29.4    
29.9    
30.5    
31.0    
31.6    
32.1    
32.6    
33.2    
33.7    
34.2    
34.8    
35.3    
35.8    
36.4    
36.9    
37.4    
38.0    
38.5    
39.0    
39.6    
40.1    
40.6    
41.2    
41.7    
42.2    
42.8    
43.3    
43.9    
44.4    
44.9    
45.5    
46.0    
46.5    
47.1    
47.6    
48.1    
48.7    
49.2    
49.7    
50.3    
50.8    
51.3    
51.9    
52.4    
52.9    
53.5    
54.0    
54.5    
55.1    
55.6    
56.1    
56.7    
57.2    
57.8    
58.3    
58.8    
59.4    
59.9    
60.4    
61.0    
61.5    
62.0    
62.6    
63.1    
63.6    
64.2    
64.7    
65.2    
65.8    
66.3    
66.8    
67.4    
67.9    
68.4    
69.0    
69.5    
70.1    
70.6    
71.1    
71.7    
72.2    
72.7    
73.3    
73.8    
74.3    
74.9    
75.4    
75.9    
76.5    
77.0    
77.5    
78.1    
78.6    
79.1    
79.7    
80.2    
80.7    
81.3    
81.8    
82.4    
82.9    
83.4    
84.0    
84.5    
85.0    
85.6    
86.1    
86.6    
87.2    
87.7    
88.2    
88.8    
89.3    
89.8    
90.4    
90.9    
91.4    
92.0    
92.5    
93.0    
93.6    
94.1    
94.7    
95.2    
95.7    
96.3    
96.8    
97.3    
97.9    
98.4    
98.9    
99.5    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 9821, rend_intergenic: 5653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32965, rend_intergenic: 9924  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33886, rend_intergenic: 33743  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49615, rend_intergenic: 41220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53904, rend_intergenic: 49962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58625, rend_intergenic: 54036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63468, rend_intergenic: 61200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72018, rend_intergenic: 68509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93881, rend_intergenic: 83044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 86626 - 100512
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support