-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_5343164-5505768

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.1164-T1
Valid prediction for snap_scaffold_20-snap.1170-T1
Valid prediction for GlimmerHMM_glimmerT_45990-T1
Valid prediction for GlimmerHMM_glimmerT_45991-T1
Valid prediction for Augustus_model.g30529.t1
Valid prediction for snap_scaffold_20-snap.1167-T1
Valid prediction for snap_scaffold_20-snap.1165-T1
Valid prediction for Augustus_model.g30527.t1
Valid prediction for Augustus_model.g30521.t1
Valid prediction for snap_scaffold_20-snap.1156-T1
Valid prediction for HiQ_model.g30526.t1
Valid prediction for snap_scaffold_20-snap.1171-T1
Valid prediction for HiQ_model.g30523.t1
Valid prediction for GlimmerHMM_glimmerT_45977-T1
Valid prediction for snap_scaffold_20-snap.1160-T1
Valid prediction for Augustus_model.g30530.t1
Valid prediction for snap_scaffold_20-snap.1139-T1
Valid prediction for GlimmerHMM_glimmerT_45995-T1
Valid prediction for Augustus_model.g30532.t1
Valid prediction for snap_scaffold_20-snap.1173-T1
Valid prediction for Augustus_model.g30520.t1
Valid prediction for pasa_asmbl_27165.p1
Valid prediction for GlimmerHMM_glimmerT_45974-T1
Valid prediction for snap_scaffold_20-snap.1166-T1
Valid prediction for GlimmerHMM_glimmerT_45983-T1
Valid prediction for snap_scaffold_20-snap.1150-T1
Valid prediction for GlimmerHMM_glimmerT_45979-T1
Valid prediction for snap_scaffold_20-snap.1148-T1
Valid prediction for snap_scaffold_20-snap.1162-T1
Valid prediction for GlimmerHMM_glimmerT_45985-T1
Valid prediction for pasa_asmbl_26618.p1
Valid prediction for Augustus_model.g30524.t1
Valid prediction for GlimmerHMM_glimmerT_45992-T1
Valid prediction for snap_scaffold_20-snap.1159-T1
Valid prediction for GlimmerHMM_glimmerT_45986-T1
Valid prediction for snap_scaffold_20-snap.1144-T1
Valid prediction for GlimmerHMM_glimmerT_45975-T1
Valid prediction for snap_scaffold_20-snap.1154-T1
Valid prediction for snap_scaffold_20-snap.1157-T1
Valid prediction for snap_scaffold_20-snap.1161-T1
Valid prediction for snap_scaffold_20-snap.1174-T1
Valid prediction for snap_scaffold_20-snap.1141-T1
Valid prediction for pasa_asmbl_27236.p1
Valid prediction for snap_scaffold_20-snap.1163-T1
Valid prediction for Augustus_model.g30528.t1
Valid prediction for CodingQuarry_transcript_30505-T1
Valid prediction for CodingQuarry_transcript_30504-T1
Valid prediction for snap_scaffold_20-snap.1142-T1
Valid prediction for GlimmerHMM_glimmerT_45987-T1
Valid prediction for GlimmerHMM_glimmerT_45976-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_20-snap.1155-T1
Valid prediction for GlimmerHMM_glimmerT_45989-T1
Valid prediction for Augustus_model.g30525.t1
Valid prediction for GlimmerHMM_glimmerT_45978-T1
Valid prediction for snap_scaffold_20-snap.1151-T1
Valid prediction for snap_scaffold_20-snap.1169-T1
Valid prediction for snap_scaffold_20-snap.1153-T1
Valid prediction for GlimmerHMM_glimmerT_45982-T1
Valid prediction for snap_scaffold_20-snap.1138-T1
Valid prediction for snap_scaffold_20-snap.1158-T1
Valid prediction for snap_scaffold_20-snap.1135-T1
Valid prediction for snap_scaffold_20-snap.1136-T1
Valid prediction for GlimmerHMM_glimmerT_45981-T1
Valid prediction for Augustus_model.g30519.t1
Valid prediction for HiQ_model.g30522.t1
Valid prediction for pasa_asmbl_25760.p1
Valid prediction for snap_scaffold_20-snap.1143-T1
Valid prediction for CodingQuarry_transcript_30502-T1
Valid prediction for snap_scaffold_20-snap.1140-T1
Valid prediction for GlimmerHMM_glimmerT_45972-T1
Valid prediction for GlimmerHMM_glimmerT_45993-T1
Valid prediction for pasa_asmbl_25759.p1
Valid prediction for GlimmerHMM_glimmerT_45973-T1
Valid prediction for snap_scaffold_20-snap.1137-T1
Valid prediction for snap_scaffold_20-snap.1149-T1
Valid prediction for GlimmerHMM_glimmerT_45994-T1
Valid prediction for snap_scaffold_20-snap.1172-T1
Valid prediction for HiQ_model.g30531.t1
Valid prediction for Augustus_model.g30518.t1
Couldn't classify 17316, 17521
Sorry, prediction pasa_asmbl_25763.p1 fails validation.
(TCC)	 AT	17316-17521	GT	AGG
(GGG)	 AG	17933-18028	GT	GGG
(ACC)	 AG	18344-18435	GT	AGG
(AAA)	 AG	18836-18893	GT	AGG
(CTG)	 AG	19737-19830	GT	AGG
(GGA)	 AG	19948-20001	GT	ATG
(GGG)	 AG	20293-20376	GT	ATG
(AAA)	 AG	20495-20536	GT	AGG
(CAT)	 AG	20645-20752	GT	CGG
(ACG)	 AG	21187-21253	GT	AGG
(GCT)	 AG	21413-21583	GT	CTG
(CCC)	 AG	22455-22506	GT	AAG
(GCA)	 AG	23169-23229	GT	AGG
(AAA)	 AG	23647-23823	GT	TGG
(ATG)	 AG	24115-24348	GG	GAG
-recovered pasa_asmbl_25763.p1, terminal, 24115, 24348
-recovered pasa_asmbl_25763.p1, internal, 17933, 18028
-recovered pasa_asmbl_25763.p1, internal, 18344, 18435
-recovered pasa_asmbl_25763.p1, internal, 18836, 18893
-recovered pasa_asmbl_25763.p1, internal, 19737, 19830
-recovered pasa_asmbl_25763.p1, internal, 19948, 20001
-recovered pasa_asmbl_25763.p1, internal, 20293, 20376
-recovered pasa_asmbl_25763.p1, internal, 20495, 20536
-recovered pasa_asmbl_25763.p1, internal, 20645, 20752
-recovered pasa_asmbl_25763.p1, internal, 21187, 21253
-recovered pasa_asmbl_25763.p1, internal, 21413, 21583
-recovered pasa_asmbl_25763.p1, internal, 22455, 22506
-recovered pasa_asmbl_25763.p1, internal, 23169, 23229
-recovered pasa_asmbl_25763.p1, internal, 23647, 23823
Valid prediction for HiQ_model.g30517.t1
Valid prediction for snap_scaffold_20-snap.1168-T1
Valid prediction for GlimmerHMM_glimmerT_45980-T1
Valid prediction for GlimmerHMM_glimmerT_45984-T1
Valid prediction for GlimmerHMM_glimmerT_45988-T1
Valid prediction for snap_scaffold_20-snap.1147-T1
Valid prediction for snap_scaffold_20-snap.1146-T1
Valid prediction for snap_scaffold_20-snap.1152-T1
Valid prediction for snap_scaffold_20-snap.1145-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 21057, rend_intergenic: 20477  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23232, rend_intergenic: 21115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34196, rend_intergenic: 32442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37020, rend_intergenic: 35818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44928, rend_intergenic: 42096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55869, rend_intergenic: 48650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59318, rend_intergenic: 56989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64866, rend_intergenic: 61592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68954, rend_intergenic: 65693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76402, rend_intergenic: 69825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129433, rend_intergenic: 119520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142721, rend_intergenic: 138258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149627, rend_intergenic: 145139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 162605
-exon list size: 312


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.2    
2.5    
2.9    
3.2    
3.5    
3.8    
4.1    
4.5    
4.8    
5.1    
5.4    
5.7    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
8.0    
8.3    
8.6    
8.9    
9.2    
9.6    
9.9    
10.2    
10.5    
10.8    
11.1    
11.5    
11.8    
12.1    
12.4    
12.7    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
15.0    
15.3    
15.6    
15.9    
16.2    
16.6    
16.9    
17.2    
17.5    
17.8    
18.2    
18.5    
18.8    
19.1    
19.4    
19.7    
20.1    
20.4    
20.7    
21.0    
21.3    
21.7    
22.0    
22.3    
22.6    
22.9    
23.2    
23.6    
23.9    
24.2    
24.5    
24.8    
25.2    
25.5    
25.8    
26.1    
26.4    
26.8    
27.1    
27.4    
27.7    
28.0    
28.3    
28.7    
29.0    
29.3    
29.6    
29.9    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.2    
32.5    
32.8    
33.1    
33.4    
33.8    
34.1    
34.4    
34.7    
35.0    
35.4    
35.7    
36.0    
36.3    
36.6    
36.9    
37.3    
37.6    
37.9    
38.2    
38.5    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.8    
41.1    
41.4    
41.7    
42.0    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.3    
44.6    
44.9    
45.2    
45.5    
45.9    
46.2    
46.5    
46.8    
47.1    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.4    
49.7    
50.0    
50.3    
50.6    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.9    
53.2    
53.5    
53.8    
54.1    
54.5    
54.8    
55.1    
55.4    
55.7    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
58.0    
58.3    
58.6    
58.9    
59.2    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.5    
61.8    
62.1    
62.4    
62.7    
63.1    
63.4    
63.7    
64.0    
64.3    
64.6    
65.0    
65.3    
65.6    
65.9    
66.2    
66.6    
66.9    
67.2    
67.5    
67.8    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.1    
70.4    
70.7    
71.0    
71.3    
71.7    
72.0    
72.3    
72.6    
72.9    
73.2    
73.6    
73.9    
74.2    
74.5    
74.8    
75.2    
75.5    
75.8    
76.1    
76.4    
76.8    
77.1    
77.4    
77.7    
78.0    
78.3    
78.7    
79.0    
79.3    
79.6    
79.9    
80.3    
80.6    
80.9    
81.2    
81.5    
81.8    
82.2    
82.5    
82.8    
83.1    
83.4    
83.8    
84.1    
84.4    
84.7    
85.0    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.3    
87.6    
87.9    
88.2    
88.5    
88.9    
89.2    
89.5    
89.8    
90.1    
90.4    
90.8    
91.1    
91.4    
91.7    
92.0    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.3    
94.6    
94.9    
95.2    
95.5    
95.9    
96.2    
96.5    
96.8    
97.1    
97.5    
97.8    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 21057, rend_intergenic: 20477  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23232, rend_intergenic: 21115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34196, rend_intergenic: 32442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37020, rend_intergenic: 35818  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44928, rend_intergenic: 42096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55869, rend_intergenic: 48650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59318, rend_intergenic: 56989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64866, rend_intergenic: 61592  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68954, rend_intergenic: 65693  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76402, rend_intergenic: 69825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129433, rend_intergenic: 119520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142721, rend_intergenic: 138258  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149627, rend_intergenic: 145139  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support