-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_5155269-5344797

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_45968-T1
Valid prediction for Augustus_model.g30503.t1
Couldn't classify 21136, 22047
Couldn't classify 22108, 22233
Sorry, prediction pasa_asmbl_26608.p1 fails validation.
(ATG)	 GT	21136-22047	AT	AGA
(AGT)	 AC	22108-22233	CT	TCC
Valid prediction for snap_scaffold_20-snap.1090-T1
Valid prediction for snap_scaffold_20-snap.1114-T1
Valid prediction for Augustus_model.g30502.t1
Valid prediction for GlimmerHMM_glimmerT_45949-T1
Valid prediction for pasa_asmbl_26610.p1
Valid prediction for snap_scaffold_20-snap.1127-T1
Valid prediction for snap_scaffold_20-snap.1094-T1
Valid prediction for Augustus_model.g30504.t1
Valid prediction for snap_scaffold_20-snap.1100-T1
Valid prediction for GlimmerHMM_glimmerT_45950-T1
Valid prediction for GlimmerHMM_glimmerT_45952-T1
Valid prediction for snap_scaffold_20-snap.1107-T1
Valid prediction for snap_scaffold_20-snap.1098-T1
Valid prediction for snap_scaffold_20-snap.1129-T1
Valid prediction for snap_scaffold_20-snap.1096-T1
Valid prediction for snap_scaffold_20-snap.1106-T1
Valid prediction for GlimmerHMM_glimmerT_45953-T1
Valid prediction for CodingQuarry_transcript_30500-T1
Valid prediction for snap_scaffold_20-snap.1095-T1
Valid prediction for GlimmerHMM_glimmerT_45951-T1
Valid prediction for snap_scaffold_20-snap.1119-T1
Valid prediction for snap_scaffold_20-snap.1126-T1
Valid prediction for snap_scaffold_20-snap.1103-T1
Valid prediction for snap_scaffold_20-snap.1123-T1
Valid prediction for snap_scaffold_20-snap.1132-T1
Valid prediction for snap_scaffold_20-snap.1125-T1
Valid prediction for GlimmerHMM_glimmerT_45960-T1
Valid prediction for snap_scaffold_20-snap.1097-T1
Valid prediction for snap_scaffold_20-snap.1105-T1
Couldn't classify 31407, 32141
Sorry, prediction pasa_asmbl_26612.p1 fails validation.
(CCT)	 TC	31407-32141	TA	AGT
Valid prediction for snap_scaffold_20-snap.1116-T1
Valid prediction for snap_scaffold_20-snap.1134-T1
Valid prediction for GlimmerHMM_glimmerT_45963-T1
Valid prediction for pasa_asmbl_26613.p1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_20-snap.1128-T1
Valid prediction for snap_scaffold_20-snap.1113-T1
Valid prediction for snap_scaffold_20-snap.1118-T1
Valid prediction for Augustus_model.g30505.t1
Valid prediction for GlimmerHMM_glimmerT_45956-T1
Valid prediction for GlimmerHMM_glimmerT_45967-T1
Valid prediction for Augustus_model.g30511.t1
Valid prediction for snap_scaffold_20-snap.1092-T1
Valid prediction for snap_scaffold_20-snap.1091-T1
Valid prediction for CodingQuarry_transcript_30501-T1
Valid prediction for snap_scaffold_20-snap.1131-T1
Valid prediction for pasa_asmbl_26319.p1
Valid prediction for GlimmerHMM_glimmerT_45969-T1
Valid prediction for GlimmerHMM_glimmerT_45970-T1
Valid prediction for snap_scaffold_20-snap.1122-T1
Valid prediction for snap_scaffold_20-snap.1133-T1
Valid prediction for snap_scaffold_20-snap.1101-T1
Valid prediction for Augustus_model.g30508.t1
Valid prediction for snap_scaffold_20-snap.1130-T1
Valid prediction for snap_scaffold_20-snap.1093-T1
Valid prediction for GlimmerHMM_glimmerT_45957-T1
Valid prediction for GlimmerHMM_glimmerT_45962-T1
Valid prediction for GlimmerHMM_glimmerT_45958-T1
Valid prediction for snap_scaffold_20-snap.1120-T1
Valid prediction for GlimmerHMM_glimmerT_45965-T1
Valid prediction for GlimmerHMM_glimmerT_45964-T1
Valid prediction for Augustus_model.g30513.t1
Valid prediction for snap_scaffold_20-snap.1121-T1
Valid prediction for Augustus_model.g30515.t1
Valid prediction for Augustus_model.g30512.t1
Valid prediction for snap_scaffold_20-snap.1109-T1
Valid prediction for GlimmerHMM_glimmerT_45961-T1
Valid prediction for snap_scaffold_20-snap.1111-T1
Valid prediction for GlimmerHMM_glimmerT_45959-T1
Valid prediction for GlimmerHMM_glimmerT_45966-T1
Valid prediction for snap_scaffold_20-snap.1115-T1
Valid prediction for GlimmerHMM_glimmerT_45947-T1
Valid prediction for GlimmerHMM_glimmerT_45954-T1
Valid prediction for snap_scaffold_20-snap.1110-T1
Valid prediction for GlimmerHMM_glimmerT_45955-T1
Valid prediction for GlimmerHMM_glimmerT_45948-T1
Valid prediction for GlimmerHMM_glimmerT_45971-T1
Valid prediction for Augustus_model.g30514.t1
Valid prediction for snap_scaffold_20-snap.1112-T1
Valid prediction for Augustus_model.g30506.t1
Valid prediction for snap_scaffold_20-snap.1099-T1
Valid prediction for Augustus_model.g30510.t1
Valid prediction for snap_scaffold_20-snap.1117-T1
Valid prediction for snap_scaffold_20-snap.1124-T1
Valid prediction for Augustus_model.g30507.t1
Valid prediction for snap_scaffold_20-snap.1102-T1
Valid prediction for HiQ_model.g30516.t1
Valid prediction for Augustus_model.g30509.t1
Valid prediction for snap_scaffold_20-snap.1108-T1
Valid prediction for snap_scaffold_20-snap.1104-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 24886, rend_intergenic: 6785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28515, rend_intergenic: 25657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45198, rend_intergenic: 42186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62154, rend_intergenic: 51905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70956, rend_intergenic: 65855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91972, rend_intergenic: 89089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117711, rend_intergenic: 115264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132314, rend_intergenic: 131871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136262, rend_intergenic: 132585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151239, rend_intergenic: 138837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162479, rend_intergenic: 157688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185839, rend_intergenic: 183832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188806, rend_intergenic: 185841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 189529
-exon list size: 364


building trellis

0.3    
0.5    
0.8    
1.1    
1.4    
1.6    
1.9    
2.2    
2.5    
2.7    
3.0    
3.3    
3.6    
3.8    
4.1    
4.4    
4.6    
4.9    
5.2    
5.5    
5.7    
6.0    
6.3    
6.6    
6.8    
7.1    
7.4    
7.7    
7.9    
8.2    
8.5    
8.7    
9.0    
9.3    
9.6    
9.8    
10.1    
10.4    
10.7    
10.9    
11.2    
11.5    
11.7    
12.0    
12.3    
12.6    
12.8    
13.1    
13.4    
13.7    
13.9    
14.2    
14.5    
14.8    
15.0    
15.3    
15.6    
15.8    
16.1    
16.4    
16.7    
16.9    
17.2    
17.5    
17.8    
18.0    
18.3    
18.6    
18.9    
19.1    
19.4    
19.7    
19.9    
20.2    
20.5    
20.8    
21.0    
21.3    
21.6    
21.9    
22.1    
22.4    
22.7    
23.0    
23.2    
23.5    
23.8    
24.0    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
26.0    
26.2    
26.5    
26.8    
27.0    
27.3    
27.6    
27.9    
28.1    
28.4    
28.7    
29.0    
29.2    
29.5    
29.8    
30.1    
30.3    
30.6    
30.9    
31.1    
31.4    
31.7    
32.0    
32.2    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.2    
34.4    
34.7    
35.0    
35.2    
35.5    
35.8    
36.1    
36.3    
36.6    
36.9    
37.2    
37.4    
37.7    
38.0    
38.3    
38.5    
38.8    
39.1    
39.3    
39.6    
39.9    
40.2    
40.4    
40.7    
41.0    
41.3    
41.5    
41.8    
42.1    
42.3    
42.6    
42.9    
43.2    
43.4    
43.7    
44.0    
44.3    
44.5    
44.8    
45.1    
45.4    
45.6    
45.9    
46.2    
46.4    
46.7    
47.0    
47.3    
47.5    
47.8    
48.1    
48.4    
48.6    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.4    
51.6    
51.9    
52.2    
52.5    
52.7    
53.0    
53.3    
53.6    
53.8    
54.1    
54.4    
54.6    
54.9    
55.2    
55.5    
55.7    
56.0    
56.3    
56.6    
56.8    
57.1    
57.4    
57.7    
57.9    
58.2    
58.5    
58.7    
59.0    
59.3    
59.6    
59.8    
60.1    
60.4    
60.7    
60.9    
61.2    
61.5    
61.7    
62.0    
62.3    
62.6    
62.8    
63.1    
63.4    
63.7    
63.9    
64.2    
64.5    
64.8    
65.0    
65.3    
65.6    
65.8    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.8    
68.0    
68.3    
68.6    
68.9    
69.1    
69.4    
69.7    
69.9    
70.2    
70.5    
70.8    
71.0    
71.3    
71.6    
71.9    
72.1    
72.4    
72.7    
73.0    
73.2    
73.5    
73.8    
74.0    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
76.0    
76.2    
76.5    
76.8    
77.0    
77.3    
77.6    
77.9    
78.1    
78.4    
78.7    
79.0    
79.2    
79.5    
79.8    
80.1    
80.3    
80.6    
80.9    
81.1    
81.4    
81.7    
82.0    
82.2    
82.5    
82.8    
83.1    
83.3    
83.6    
83.9    
84.2    
84.4    
84.7    
85.0    
85.2    
85.5    
85.8    
86.1    
86.3    
86.6    
86.9    
87.2    
87.4    
87.7    
88.0    
88.3    
88.5    
88.8    
89.1    
89.3    
89.6    
89.9    
90.2    
90.4    
90.7    
91.0    
91.3    
91.5    
91.8    
92.1    
92.3    
92.6    
92.9    
93.2    
93.4    
93.7    
94.0    
94.3    
94.5    
94.8    
95.1    
95.4    
95.6    
95.9    
96.2    
96.4    
96.7    
97.0    
97.3    
97.5    
97.8    
98.1    
98.4    
98.6    
98.9    
99.2    
99.5    
99.7    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 24886, rend_intergenic: 6785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28515, rend_intergenic: 25657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45198, rend_intergenic: 42186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62154, rend_intergenic: 51905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70956, rend_intergenic: 65855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91972, rend_intergenic: 89089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117711, rend_intergenic: 115264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132314, rend_intergenic: 131871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136262, rend_intergenic: 132585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151239, rend_intergenic: 138837  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162479, rend_intergenic: 157688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185839, rend_intergenic: 183832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 188806, rend_intergenic: 185841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 28 predictions persist after filtering for low support