-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_4756151-4953817

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.1013-T1
Valid prediction for GlimmerHMM_glimmerT_45918-T1
Valid prediction for snap_scaffold_20-snap.1018-T1
Valid prediction for GlimmerHMM_glimmerT_45917-T1
Valid prediction for snap_scaffold_20-snap.1029-T1
Valid prediction for snap_scaffold_20-snap.1017-T1
Valid prediction for snap_scaffold_20-snap.1004-T1
Valid prediction for GlimmerHMM_glimmerT_45914-T1
Valid prediction for GlimmerHMM_glimmerT_45911-T1
Valid prediction for snap_scaffold_20-snap.997-T1
Valid prediction for snap_scaffold_20-snap.1043-T1
Valid prediction for snap_scaffold_20-snap.1026-T1
Valid prediction for snap_scaffold_20-snap.1022-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.1028-T1
Valid prediction for snap_scaffold_20-snap.1035-T1
Valid prediction for snap_scaffold_20-snap.1040-T1
Valid prediction for snap_scaffold_20-snap.1031-T1
Valid prediction for snap_scaffold_20-snap.1011-T1
Valid prediction for GlimmerHMM_glimmerT_45912-T1
Valid prediction for GlimmerHMM_glimmerT_45921-T1
Valid prediction for snap_scaffold_20-snap.1024-T1
Valid prediction for snap_scaffold_20-snap.999-T1
Valid prediction for Augustus_model.g30473.t1
Valid prediction for snap_scaffold_20-snap.1037-T1
Valid prediction for Augustus_model.g30474.t1
Valid prediction for GlimmerHMM_glimmerT_45906-T1
Valid prediction for GlimmerHMM_glimmerT_45910-T1
Valid prediction for snap_scaffold_20-snap.1005-T1
Valid prediction for Augustus_model.g30479.t1
Valid prediction for snap_scaffold_20-snap.1044-T1
Valid prediction for Augustus_model.g30470.t1
Valid prediction for Augustus_model.g30475.t1
Valid prediction for GlimmerHMM_glimmerT_45924-T1
Valid prediction for GlimmerHMM_glimmerT_45915-T1
Valid prediction for snap_scaffold_20-snap.1034-T1
Valid prediction for snap_scaffold_20-snap.1041-T1
Valid prediction for snap_scaffold_20-snap.1000-T1
Valid prediction for snap_scaffold_20-snap.1032-T1
Valid prediction for Augustus_model.g30476.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_45923-T1
Valid prediction for snap_scaffold_20-snap.1008-T1
Valid prediction for GlimmerHMM_glimmerT_45908-T1
Valid prediction for GlimmerHMM_glimmerT_45907-T1
Valid prediction for snap_scaffold_20-snap.1027-T1
Valid prediction for Augustus_model.g30484.t1
Valid prediction for GlimmerHMM_glimmerT_45919-T1
Valid prediction for GlimmerHMM_glimmerT_45916-T1
Valid prediction for snap_scaffold_20-snap.1030-T1
Valid prediction for snap_scaffold_20-snap.1025-T1
Valid prediction for Augustus_model.g30485.t1
Valid prediction for snap_scaffold_20-snap.1016-T1
Valid prediction for snap_scaffold_20-snap.1036-T1
Valid prediction for snap_scaffold_20-snap.1021-T1
Valid prediction for snap_scaffold_20-snap.1020-T1
Valid prediction for snap_scaffold_20-snap.1002-T1
Valid prediction for snap_scaffold_20-snap.1023-T1
Valid prediction for snap_scaffold_20-snap.998-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.1014-T1
Valid prediction for GlimmerHMM_glimmerT_45909-T1
Valid prediction for GlimmerHMM_glimmerT_45905-T1
Valid prediction for Augustus_model.g30469.t1
Valid prediction for snap_scaffold_20-snap.1006-T1
Valid prediction for snap_scaffold_20-snap.1038-T1
Valid prediction for GlimmerHMM_glimmerT_45920-T1
Valid prediction for snap_scaffold_20-snap.1039-T1
Valid prediction for snap_scaffold_20-snap.1033-T1
Valid prediction for snap_scaffold_20-snap.1001-T1
Valid prediction for GlimmerHMM_glimmerT_45922-T1
Valid prediction for Augustus_model.g30481.t1
Valid prediction for snap_scaffold_20-snap.1015-T1
Valid prediction for snap_scaffold_20-snap.1009-T1
Valid prediction for snap_scaffold_20-snap.1010-T1
Valid prediction for snap_scaffold_20-snap.1042-T1
Valid prediction for Augustus_model.g30471.t1
Valid prediction for snap_scaffold_20-snap.1003-T1
Valid prediction for Augustus_model.g30483.t1
Valid prediction for Augustus_model.g30477.t1
Valid prediction for Augustus_model.g30480.t1
Valid prediction for snap_scaffold_20-snap.1007-T1
Valid prediction for GlimmerHMM_glimmerT_45913-T1
Valid prediction for Augustus_model.g30482.t1
Valid prediction for Augustus_model.g30478.t1
Valid prediction for Augustus_model.g30468.t1
Valid prediction for snap_scaffold_20-snap.1012-T1
Valid prediction for Augustus_model.g30472.t1
Valid prediction for snap_scaffold_20-snap.1019-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20983, rend_intergenic: 10187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65957, rend_intergenic: 65353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69026, rend_intergenic: 67298  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78738, rend_intergenic: 75838  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109796, rend_intergenic: 106793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117204, rend_intergenic: 110770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140328, rend_intergenic: 138570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151679, rend_intergenic: 142359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160349, rend_intergenic: 153718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171490, rend_intergenic: 162477  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171662, rend_intergenic: 171599  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175884, rend_intergenic: 172178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182007, rend_intergenic: 179356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189242, rend_intergenic: 184318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194658, rend_intergenic: 189791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 197667
-exon list size: 341


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.7    
2.0    
2.3    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
5.0    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.7    
9.0    
9.3    
9.6    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.0    
12.2    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.5    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.2    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.2    
24.5    
24.8    
25.1    
25.4    
25.7    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.7    
28.0    
28.3    
28.6    
28.9    
29.2    
29.4    
29.7    
30.0    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.1    
32.4    
32.7    
32.9    
33.2    
33.5    
33.8    
34.1    
34.4    
34.7    
35.0    
35.3    
35.6    
35.9    
36.2    
36.4    
36.7    
37.0    
37.3    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
39.9    
40.2    
40.5    
40.8    
41.1    
41.4    
41.7    
42.0    
42.3    
42.6    
42.9    
43.1    
43.4    
43.7    
44.0    
44.3    
44.6    
44.9    
45.2    
45.5    
45.8    
46.1    
46.4    
46.6    
46.9    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.1    
53.4    
53.6    
53.9    
54.2    
54.5    
54.8    
55.1    
55.4    
55.7    
56.0    
56.3    
56.6    
56.9    
57.1    
57.4    
57.7    
58.0    
58.3    
58.6    
58.9    
59.2    
59.5    
59.8    
60.1    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.7    
63.0    
63.3    
63.6    
63.8    
64.1    
64.4    
64.7    
65.0    
65.3    
65.6    
65.9    
66.2    
66.5    
66.8    
67.1    
67.3    
67.6    
67.9    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.0    
70.3    
70.6    
70.8    
71.1    
71.4    
71.7    
72.0    
72.3    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.3    
74.6    
74.9    
75.2    
75.5    
75.8    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.8    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.5    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.8    
88.0    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.4    
90.7    
91.0    
91.3    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.0    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.7    
98.0    
98.3    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 20983, rend_intergenic: 10187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65957, rend_intergenic: 65353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69026, rend_intergenic: 67298  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78738, rend_intergenic: 75838  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109796, rend_intergenic: 106793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117204, rend_intergenic: 110770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140328, rend_intergenic: 138570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151679, rend_intergenic: 142359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160349, rend_intergenic: 153718  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171490, rend_intergenic: 162477  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171662, rend_intergenic: 171599  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175884, rend_intergenic: 172178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182007, rend_intergenic: 179356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189242, rend_intergenic: 184318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194658, rend_intergenic: 189791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support