-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_4527860-4759291

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.966-T1
Valid prediction for GlimmerHMM_glimmerT_45894-T1
Valid prediction for GlimmerHMM_glimmerT_45902-T1
Valid prediction for snap_scaffold_20-snap.957-T1
Valid prediction for GlimmerHMM_glimmerT_45898-T1
Valid prediction for snap_scaffold_20-snap.987-T1
Valid prediction for Augustus_model.g30465.t1
Valid prediction for Augustus_model.g30463.t1
Valid prediction for GlimmerHMM_glimmerT_45892-T1
Valid prediction for snap_scaffold_20-snap.992-T1
Valid prediction for CodingQuarry_transcript_30497-T1
Valid prediction for GlimmerHMM_glimmerT_45891-T1
Valid prediction for snap_scaffold_20-snap.978-T1
Valid prediction for snap_scaffold_20-snap.982-T1
Valid prediction for snap_scaffold_20-snap.989-T1
Valid prediction for snap_scaffold_20-snap.985-T1
Valid prediction for snap_scaffold_20-snap.975-T1
Couldn't classify 34032, 34164
Sorry, prediction pasa_asmbl_26595.p1 fails validation.
(CAC)	 TT	34032-34164	GT	CGG
(CTC)	 AG	34381-34495	GT	ATG
(AGT)	 AG	34619-34702	GT	AGG
(GGT)	 AG	34938-34998	GA	GAG
-recovered pasa_asmbl_26595.p1, terminal, 34938, 34998
-recovered pasa_asmbl_26595.p1, internal, 34381, 34495
-recovered pasa_asmbl_26595.p1, internal, 34619, 34702
Valid prediction for snap_scaffold_20-snap.980-T1
Valid prediction for snap_scaffold_20-snap.969-T1
Valid prediction for GlimmerHMM_glimmerT_45903-T1
Valid prediction for snap_scaffold_20-snap.970-T1
Valid prediction for snap_scaffold_20-snap.990-T1
Valid prediction for snap_scaffold_20-snap.986-T1
Valid prediction for snap_scaffold_20-snap.962-T1
Valid prediction for snap_scaffold_20-snap.960-T1
Valid prediction for GlimmerHMM_glimmerT_45887-T1
Valid prediction for Augustus_model.g30460.t1
Valid prediction for snap_scaffold_20-snap.976-T1
Valid prediction for GlimmerHMM_glimmerT_45897-T1
Valid prediction for GlimmerHMM_glimmerT_45899-T1
Valid prediction for snap_scaffold_20-snap.964-T1
Valid prediction for snap_scaffold_20-snap.993-T1
Valid prediction for snap_scaffold_20-snap.983-T1
Valid prediction for Augustus_model.g30464.t1
Valid prediction for snap_scaffold_20-snap.972-T1
Valid prediction for HiQ_model.g30461.t1
Valid prediction for Augustus_model.g30467.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_20-snap.973-T1
Valid prediction for snap_scaffold_20-snap.961-T1
Valid prediction for snap_scaffold_20-snap.995-T1
Valid prediction for snap_scaffold_20-snap.981-T1
Valid prediction for Augustus_model.g30459.t1
Valid prediction for Augustus_model.g30458.t1
Valid prediction for GlimmerHMM_glimmerT_45895-T1
Valid prediction for snap_scaffold_20-snap.984-T1
Valid prediction for Augustus_model.g30466.t1
Valid prediction for snap_scaffold_20-snap.971-T1
Valid prediction for snap_scaffold_20-snap.959-T1
Valid prediction for snap_scaffold_20-snap.965-T1
Valid prediction for Augustus_model.g30462.t1
Valid prediction for snap_scaffold_20-snap.958-T1
Valid prediction for GlimmerHMM_glimmerT_45900-T1
Valid prediction for GlimmerHMM_glimmerT_45889-T1
Valid prediction for snap_scaffold_20-snap.988-T1
Valid prediction for GlimmerHMM_glimmerT_45893-T1
Valid prediction for snap_scaffold_20-snap.968-T1
Valid prediction for GlimmerHMM_glimmerT_45896-T1
Valid prediction for snap_scaffold_20-snap.996-T1
Valid prediction for snap_scaffold_20-snap.967-T1
Valid prediction for GlimmerHMM_glimmerT_45901-T1
Valid prediction for snap_scaffold_20-snap.991-T1
Valid prediction for snap_scaffold_20-snap.994-T1
Valid prediction for snap_scaffold_20-snap.974-T1
Valid prediction for snap_scaffold_20-snap.979-T1
Valid prediction for snap_scaffold_20-snap.963-T1
Valid prediction for GlimmerHMM_glimmerT_45888-T1
Valid prediction for snap_scaffold_20-snap.956-T1
Valid prediction for GlimmerHMM_glimmerT_45890-T1
Valid prediction for snap_scaffold_20-snap.977-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10039, rend_intergenic: 6480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36972, rend_intergenic: 35735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39697, rend_intergenic: 37955  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145698, rend_intergenic: 143441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159502, rend_intergenic: 157524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175976, rend_intergenic: 174037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178365, rend_intergenic: 176493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185685, rend_intergenic: 182068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 231432
-exon list size: 244


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.3    
3.7    
4.1    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.8    
10.2    
10.6    
11.0    
11.4    
11.8    
12.2    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.9    
16.3    
16.7    
17.1    
17.5    
17.9    
18.3    
18.7    
19.1    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
22.0    
22.4    
22.8    
23.2    
23.6    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.4    
26.8    
27.2    
27.6    
28.0    
28.5    
28.9    
29.3    
29.7    
30.1    
30.5    
30.9    
31.3    
31.7    
32.1    
32.5    
32.9    
33.3    
33.7    
34.1    
34.6    
35.0    
35.4    
35.8    
36.2    
36.6    
37.0    
37.4    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.7    
41.1    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
43.9    
44.3    
44.7    
45.1    
45.5    
45.9    
46.3    
46.7    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.3    
53.7    
54.1    
54.5    
54.9    
55.3    
55.7    
56.1    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.6    
63.0    
63.4    
63.8    
64.2    
64.6    
65.0    
65.4    
65.9    
66.3    
66.7    
67.1    
67.5    
67.9    
68.3    
68.7    
69.1    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
72.0    
72.4    
72.8    
73.2    
73.6    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.4    
76.8    
77.2    
77.6    
78.0    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.9    
81.3    
81.7    
82.1    
82.5    
82.9    
83.3    
83.7    
84.1    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.8    
88.2    
88.6    
89.0    
89.4    
89.8    
90.2    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
95.9    
96.3    
96.7    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 10039, rend_intergenic: 6480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36972, rend_intergenic: 35735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39697, rend_intergenic: 37955  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145698, rend_intergenic: 143441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159502, rend_intergenic: 157524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175976, rend_intergenic: 174037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178365, rend_intergenic: 176493  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185685, rend_intergenic: 182068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support