-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_3594198-3733965

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g30400.t1
Valid prediction for pasa_asmbl_26542.p1
Valid prediction for GlimmerHMM_glimmerT_45760-T1
Valid prediction for snap_scaffold_20-snap.748-T1
Couldn't classify 119443, 119624
Sorry, prediction pasa_asmbl_26539.p1 fails validation.
(AGT)	 TG	119443-119624	GT	GAG
(GTA)	 AG	120341-120455	GT	AGG
(GGT)	 AG	120589-120756	CG	GAC
-recovered pasa_asmbl_26539.p1, terminal, 120589, 120756
-recovered pasa_asmbl_26539.p1, internal, 120341, 120455
Valid prediction for Augustus_model.g30393.t1
Valid prediction for GlimmerHMM_glimmerT_45766-T1
Valid prediction for snap_scaffold_20-snap.778-T1
Valid prediction for snap_scaffold_20-snap.753-T1
Valid prediction for snap_scaffold_20-snap.764-T1
Valid prediction for GlimmerHMM_glimmerT_45765-T1
Valid prediction for snap_scaffold_20-snap.769-T1
Valid prediction for snap_scaffold_20-snap.770-T1
Valid prediction for CodingQuarry_transcript_30482-T1
Valid prediction for snap_scaffold_20-snap.773-T1
Valid prediction for snap_scaffold_20-snap.749-T1
Valid prediction for HiQ_model.g30397.t1
Valid prediction for GlimmerHMM_glimmerT_45756-T1
Valid prediction for snap_scaffold_20-snap.756-T1
Valid prediction for GlimmerHMM_glimmerT_45767-T1
Valid prediction for Augustus_model.g30390.t1
Valid prediction for snap_scaffold_20-snap.752-T1
Valid prediction for snap_scaffold_20-snap.758-T1
Valid prediction for GlimmerHMM_glimmerT_45755-T1
Valid prediction for snap_scaffold_20-snap.760-T1
Valid prediction for snap_scaffold_20-snap.775-T1
Valid prediction for pasa_asmbl_26537.p1
Valid prediction for snap_scaffold_20-snap.757-T1
Valid prediction for CodingQuarry_transcript_30481-T1
Valid prediction for snap_scaffold_20-snap.754-T1
Valid prediction for snap_scaffold_20-snap.772-T1
Valid prediction for snap_scaffold_20-snap.751-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_30480-T1
Valid prediction for snap_scaffold_20-snap.771-T1
Valid prediction for GlimmerHMM_glimmerT_45764-T1
Valid prediction for Augustus_model.g30395.t1
Valid prediction for snap_scaffold_20-snap.747-T1
Valid prediction for snap_scaffold_20-snap.768-T1
Valid prediction for GlimmerHMM_glimmerT_45762-T1
Valid prediction for snap_scaffold_20-snap.762-T1
Valid prediction for Augustus_model.g30399.t1
Valid prediction for snap_scaffold_20-snap.766-T1
Valid prediction for Augustus_model.g30394.t1
Valid prediction for snap_scaffold_20-snap.765-T1
Valid prediction for snap_scaffold_20-snap.776-T1
Valid prediction for GlimmerHMM_glimmerT_45768-T1
Valid prediction for snap_scaffold_20-snap.750-T1
Valid prediction for Augustus_model.g30392.t1
Valid prediction for snap_scaffold_20-snap.761-T1
Valid prediction for snap_scaffold_20-snap.759-T1
Valid prediction for snap_scaffold_20-snap.755-T1
Valid prediction for HiQ_model.g30396.t1
Valid prediction for GlimmerHMM_glimmerT_45758-T1
Valid prediction for GlimmerHMM_glimmerT_45759-T1
Valid prediction for pasa_asmbl_25704.p1
Valid prediction for Augustus_model.g30391.t1
Valid prediction for snap_scaffold_20-snap.767-T1
Valid prediction for snap_scaffold_20-snap.777-T1
Valid prediction for snap_scaffold_20-snap.774-T1
Valid prediction for Augustus_model.g30398.t1
Valid prediction for GlimmerHMM_glimmerT_45763-T1
Valid prediction for GlimmerHMM_glimmerT_45769-T1
Valid prediction for GlimmerHMM_glimmerT_45757-T1
Valid prediction for Augustus_model.g30389.t1
Valid prediction for GlimmerHMM_glimmerT_45761-T1
Valid prediction for snap_scaffold_20-snap.763-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14698, rend_intergenic: 4469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50275, rend_intergenic: 17112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52133, rend_intergenic: 50310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70414, rend_intergenic: 54984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75373, rend_intergenic: 74238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80295, rend_intergenic: 75445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86175, rend_intergenic: 80369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97111, rend_intergenic: 93734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102046, rend_intergenic: 97760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114061, rend_intergenic: 107790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117455, rend_intergenic: 115423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121817, rend_intergenic: 121464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127677, rend_intergenic: 126608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137977, rend_intergenic: 128951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 139768
-exon list size: 271


building trellis

0.4    
0.7    
1.1    
1.5    
1.8    
2.2    
2.6    
2.9    
3.3    
3.7    
4.0    
4.4    
4.8    
5.1    
5.5    
5.9    
6.2    
6.6    
7.0    
7.3    
7.7    
8.1    
8.4    
8.8    
9.2    
9.5    
9.9    
10.3    
10.6    
11.0    
11.4    
11.7    
12.1    
12.5    
12.8    
13.2    
13.6    
13.9    
14.3    
14.7    
15.0    
15.4    
15.8    
16.1    
16.5    
16.8    
17.2    
17.6    
17.9    
18.3    
18.7    
19.0    
19.4    
19.8    
20.1    
20.5    
20.9    
21.2    
21.6    
22.0    
22.3    
22.7    
23.1    
23.4    
23.8    
24.2    
24.5    
24.9    
25.3    
25.6    
26.0    
26.4    
26.7    
27.1    
27.5    
27.8    
28.2    
28.6    
28.9    
29.3    
29.7    
30.0    
30.4    
30.8    
31.1    
31.5    
31.9    
32.2    
32.6    
33.0    
33.3    
33.7    
34.1    
34.4    
34.8    
35.2    
35.5    
35.9    
36.3    
36.6    
37.0    
37.4    
37.7    
38.1    
38.5    
38.8    
39.2    
39.6    
39.9    
40.3    
40.7    
41.0    
41.4    
41.8    
42.1    
42.5    
42.9    
43.2    
43.6    
44.0    
44.3    
44.7    
45.1    
45.4    
45.8    
46.2    
46.5    
46.9    
47.3    
47.6    
48.0    
48.4    
48.7    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.3    
51.6    
52.0    
52.4    
52.7    
53.1    
53.5    
53.8    
54.2    
54.6    
54.9    
55.3    
55.7    
56.0    
56.4    
56.8    
57.1    
57.5    
57.9    
58.2    
58.6    
59.0    
59.3    
59.7    
60.1    
60.4    
60.8    
61.2    
61.5    
61.9    
62.3    
62.6    
63.0    
63.4    
63.7    
64.1    
64.5    
64.8    
65.2    
65.6    
65.9    
66.3    
66.7    
67.0    
67.4    
67.8    
68.1    
68.5    
68.9    
69.2    
69.6    
70.0    
70.3    
70.7    
71.1    
71.4    
71.8    
72.2    
72.5    
72.9    
73.3    
73.6    
74.0    
74.4    
74.7    
75.1    
75.5    
75.8    
76.2    
76.6    
76.9    
77.3    
77.7    
78.0    
78.4    
78.8    
79.1    
79.5    
79.9    
80.2    
80.6    
81.0    
81.3    
81.7    
82.1    
82.4    
82.8    
83.2    
83.5    
83.9    
84.2    
84.6    
85.0    
85.3    
85.7    
86.1    
86.4    
86.8    
87.2    
87.5    
87.9    
88.3    
88.6    
89.0    
89.4    
89.7    
90.1    
90.5    
90.8    
91.2    
91.6    
91.9    
92.3    
92.7    
93.0    
93.4    
93.8    
94.1    
94.5    
94.9    
95.2    
95.6    
96.0    
96.3    
96.7    
97.1    
97.4    
97.8    
98.2    
98.5    
98.9    
99.3    
99.6    
-found 22 predictions from path traversal
Error with prediction: snap lend_intergenic: 14698, rend_intergenic: 4469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50275, rend_intergenic: 17112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52133, rend_intergenic: 50310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70414, rend_intergenic: 54984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75373, rend_intergenic: 74238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80295, rend_intergenic: 75445  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86175, rend_intergenic: 80369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97111, rend_intergenic: 93734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102046, rend_intergenic: 97760  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114061, rend_intergenic: 107790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117455, rend_intergenic: 115423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121817, rend_intergenic: 121464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127677, rend_intergenic: 126608  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137977, rend_intergenic: 128951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support