-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_333403-574017 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 237839, 238010 Sorry, prediction pasa_asmbl_26370.p1 fails validation. (CAG) CC 237839-238010 GT AGG (GTC) AG 238099-238244 GT AGG (TGT) AG 238650-238689 GT AGG (TGT) AG 238781-238788 GT AGG -recovered pasa_asmbl_26370.p1, terminal, 238781, 238788 -recovered pasa_asmbl_26370.p1, internal, 238099, 238244 -recovered pasa_asmbl_26370.p1, internal, 238650, 238689 -recovered pasa_asmbl_26370.p1, internal, 238781, 238788 Valid prediction for GlimmerHMM_glimmerT_45319-T1 Valid prediction for GlimmerHMM_glimmerT_45323-T1 Valid prediction for CodingQuarry_transcript_30379-T1 Valid prediction for GlimmerHMM_glimmerT_45320-T1 Valid prediction for snap_scaffold_20-snap.109-T1 Valid prediction for snap_scaffold_20-snap.107-T1 Valid prediction for pasa_asmbl_26363.p1 Valid prediction for Augustus_model.g30074.t1 Valid prediction for Augustus_model.g30080.t1 Valid prediction for GlimmerHMM_glimmerT_45336-T1 Valid prediction for Augustus_model.g30090.t1 Valid prediction for snap_scaffold_20-snap.74-T1 Valid prediction for snap_scaffold_20-snap.69-T1 Couldn't classify 114108, 114195 Couldn't classify 115242, 115447 Sorry, prediction pasa_asmbl_26359.p1 fails validation. (ACC) CG 114108-114195 GT AGG (GTA) AG 114674-114814 GT GGG (GGT) AG 115242-115447 AA GTA -recovered pasa_asmbl_26359.p1, internal, 114674, 114814 Valid prediction for snap_scaffold_20-snap.94-T1 Couldn't classify 142682, 142956 Sorry, prediction pasa_asmbl_26361.p1 fails validation. (ATG) AA 141495-141555 GT AGG (AAG) AG 142063-142332 GT CGG (ATC) AG 142682-142956 AC GGA -recovered pasa_asmbl_26361.p1, initial, 141495, 141555 -recovered pasa_asmbl_26361.p1, internal, 142063, 142332 Valid prediction for snap_scaffold_20-snap.117-T1 Valid prediction for Augustus_model.g30094.t1 Valid prediction for Augustus_model.g30082.t1 Valid prediction for CodingQuarry_transcript_30380-T1 Valid prediction for Augustus_model.g30095.t1 Valid prediction for CodingQuarry_transcript_30377-T1 Valid prediction for GlimmerHMM_glimmerT_45332-T1 Valid prediction for CodingQuarry_transcript_30381-T1 Valid prediction for snap_scaffold_20-snap.82-T1 Valid prediction for Augustus_model.g30086.t1 Couldn't classify 94303, 94540 Sorry, prediction pasa_asmbl_26350.p1 fails validation. (ATC) AG 94303-94540 GT AGG (GGG) AG 94876-95012 GT GGG (GCG) AG 95403-95705 GC GAG -recovered pasa_asmbl_26350.p1, terminal, 95403, 95705 -recovered pasa_asmbl_26350.p1, internal, 94303, 94540 -recovered pasa_asmbl_26350.p1, internal, 94876, 95012 -recovered pasa_asmbl_26350.p1, internal, 95403, 95705 Couldn't classify 104804, 104853 Sorry, prediction pasa_asmbl_26357.p1 fails validation. (GAC) CA 104804-104853 GT AGG (CAA) AG 104993-105078 GT AGG (GGA) AG 105428-105500 GT AGG (CGG) AG 105771-105868 GT AGG (GGG) AG 105954-106032 GT GAG (GGA) AG 106322-106457 GT AGG (GCT) AG 106934-107038 GT AGG (CTC) AG 107557-107586 AC GAA -recovered pasa_asmbl_26357.p1, terminal, 105954, 106032 -recovered pasa_asmbl_26357.p1, terminal, 107557, 107586 -recovered pasa_asmbl_26357.p1, internal, 104993, 105078 -recovered pasa_asmbl_26357.p1, internal, 105428, 105500 -recovered pasa_asmbl_26357.p1, internal, 105771, 105868 -recovered pasa_asmbl_26357.p1, internal, 105954, 106032 -recovered pasa_asmbl_26357.p1, internal, 106322, 106457 -recovered pasa_asmbl_26357.p1, internal, 106934, 107038 Valid prediction for snap_scaffold_20-snap.104-T1 Valid prediction for snap_scaffold_20-snap.81-T1 Couldn't classify 192959, 192986 Sorry, prediction pasa_asmbl_26368.p1 fails validation. (ATG) AC 190114-190189 GT CAG (TGA) AG 191052-191153 GT AGG (ATG) AG 191530-191588 GT AGG (GAC) AG 191914-191979 GT TGG (CCG) AG 192270-192339 GT AGG (ATC) AG 192569-192629 GT CTG (ACG) AG 192959-192986 AT TGA -recovered pasa_asmbl_26368.p1, initial, 190114, 190189 add_exon() Sorry, pasa_asmbl_26368.p1 191530-191588-initial-1 is invalid. -recovered pasa_asmbl_26368.p1, initial, 191530, 191588 add_exon() Sorry, pasa_asmbl_26368.p1 192270-192339-terminal-3 is invalid. -recovered pasa_asmbl_26368.p1, terminal, 192270, 192339 -recovered pasa_asmbl_26368.p1, internal, 191052, 191153 -recovered pasa_asmbl_26368.p1, internal, 191530, 191588 -recovered pasa_asmbl_26368.p1, internal, 191914, 191979 -recovered pasa_asmbl_26368.p1, internal, 192270, 192339 -recovered pasa_asmbl_26368.p1, internal, 192569, 192629 Valid prediction for snap_scaffold_20-snap.105-T1 Valid prediction for GlimmerHMM_glimmerT_45324-T1 Valid prediction for snap_scaffold_20-snap.97-T1 Couldn't classify 193478, 193505 Sorry, prediction pasa_asmbl_27126.p1 fails validation. (CAC) CA 193478-193505 GT AGG (CTC) AG 193963-194045 GT TGG (GTG) AG 195148-195274 GT GGG (TCC) AG 196261-196336 GT AGG (GGC) AG 196909-196978 GA GAG -recovered pasa_asmbl_27126.p1, terminal, 196909, 196978 -recovered pasa_asmbl_27126.p1, internal, 193963, 194045 -recovered pasa_asmbl_27126.p1, internal, 195148, 195274 -recovered pasa_asmbl_27126.p1, internal, 196261, 196336 Valid prediction for Augustus_model.g30073.t1 Valid prediction for snap_scaffold_20-snap.83-T1 Couldn't classify 187243, 187323 Couldn't classify 189077, 189103 Sorry, prediction pasa_asmbl_26367.p1 fails validation. (CAT) TC 187243-187323 GT AGG (GAT) AG 187655-187747 GT CGG (GTA) AG 187956-188030 GT AGG (ATC) AG 188780-188866 GT AGG (TCT) AG 189077-189103 TC TGT -recovered pasa_asmbl_26367.p1, internal, 187655, 187747 -recovered pasa_asmbl_26367.p1, internal, 187956, 188030 -recovered pasa_asmbl_26367.p1, internal, 188780, 188866 Valid prediction for Augustus_model.g30079.t1 Valid prediction for snap_scaffold_20-snap.72-T1 Valid prediction for GlimmerHMM_glimmerT_45340-T1 Valid prediction for snap_scaffold_20-snap.95-T1 Valid prediction for Augustus_model.g30099.t1 Valid prediction for snap_scaffold_20-snap.111-T1 Valid prediction for Augustus_model.g30087.t1 Valid prediction for snap_scaffold_20-snap.89-T1 Valid prediction for Augustus_model.g30081.t1 Valid prediction for snap_scaffold_20-snap.91-T1 Valid prediction for Augustus_model.g30093.t1 Valid prediction for snap_scaffold_20-snap.100-T1 Valid prediction for Augustus_model.g30092.t1 Couldn't classify 79878, 79965 Couldn't classify 80954, 81069 Sorry, prediction pasa_asmbl_27230.p1 fails validation. (GTT) TG 79878-79965 GT GGG (CTC) AG 80204-80509 GT AGG (CGG) AG 80954-81069 GG GAG -recovered pasa_asmbl_27230.p1, internal, 80204, 80509 Valid prediction for Augustus_model.g30096.t1 Valid prediction for GlimmerHMM_glimmerT_45326-T1 Valid prediction for snap_scaffold_20-snap.114-T1 Couldn't classify 82984, 83011 Couldn't classify 84584, 84641 Sorry, prediction pasa_asmbl_26346.p1 fails validation. (GTG) CA 82984-83011 GT AAG (CTG) AG 83326-83452 GT AGG (GAG) AG 83727-83902 GT GGG (AGC) AG 84097-84283 GT AGG (CTT) AG 84584-84641 AC AAA -recovered pasa_asmbl_26346.p1, internal, 83326, 83452 -recovered pasa_asmbl_26346.p1, internal, 83727, 83902 -recovered pasa_asmbl_26346.p1, internal, 84097, 84283 Valid prediction for Augustus_model.g30083.t1 Valid prediction for GlimmerHMM_glimmerT_45338-T1 Valid prediction for GlimmerHMM_glimmerT_45334-T1 Valid prediction for GlimmerHMM_glimmerT_45325-T1 Valid prediction for snap_scaffold_20-snap.119-T1 Valid prediction for snap_scaffold_20-snap.76-T1 Valid prediction for snap_scaffold_20-snap.75-T1 Valid prediction for Augustus_model.g30097.t1 Valid prediction for snap_scaffold_20-snap.86-T1 Valid prediction for Augustus_model.g30084.t1 Valid prediction for GlimmerHMM_glimmerT_45322-T1 Valid prediction for GlimmerHMM_glimmerT_45329-T1 Couldn't classify 85713, 86019 Couldn't classify 87757, 87825 Sorry, prediction pasa_asmbl_26348.p1 fails validation. (GTC) CA 85713-86019 GT AGG (TAC) AG 86427-86528 GT CAG (GAC) AG 86970-86997 GT CTG (GCT) AG 87395-87452 GT TGG (GTT) AG 87557-87622 GT AGG (GGC) AG 87757-87825 GA AGG -recovered pasa_asmbl_26348.p1, internal, 86427, 86528 -recovered pasa_asmbl_26348.p1, internal, 86970, 86997 -recovered pasa_asmbl_26348.p1, internal, 87395, 87452 -recovered pasa_asmbl_26348.p1, internal, 87557, 87622 Valid prediction for GlimmerHMM_glimmerT_45335-T1 Valid prediction for GlimmerHMM_glimmerT_45327-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_20-snap.110-T1 Valid prediction for pasa_asmbl_25493.p1 Valid prediction for Augustus_model.g30089.t1 Valid prediction for snap_scaffold_20-snap.118-T1 Valid prediction for Augustus_model.g30098.t1 Valid prediction for snap_scaffold_20-snap.101-T1 Valid prediction for Augustus_model.g30088.t1 Couldn't classify 116991, 117071 Sorry, prediction pasa_asmbl_25496.p1 fails validation. (CGT) GG 116991-117071 GT AGG (AGA) AG 119151-119243 GT AGG (GCA) AG 119511-119602 GT AGG (GTT) AG 121364-121478 GT AGG (AGG) AG 122381-122510 GT CGG (GAT) AG 122834-122970 CC GAC add_exon() Sorry, pasa_asmbl_25496.p1 119511-119602-terminal-2 is invalid. -recovered pasa_asmbl_25496.p1, terminal, 119511, 119602 -recovered pasa_asmbl_25496.p1, terminal, 122834, 122970 -recovered pasa_asmbl_25496.p1, internal, 119151, 119243 -recovered pasa_asmbl_25496.p1, internal, 119511, 119602 -recovered pasa_asmbl_25496.p1, internal, 121364, 121478 -recovered pasa_asmbl_25496.p1, internal, 122381, 122510 Valid prediction for snap_scaffold_20-snap.78-T1 Valid prediction for snap_scaffold_20-snap.71-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_45337-T1 Valid prediction for snap_scaffold_20-snap.70-T1 Valid prediction for snap_scaffold_20-snap.116-T1 Valid prediction for snap_scaffold_20-snap.92-T1 Valid prediction for GlimmerHMM_glimmerT_45331-T1 Valid prediction for snap_scaffold_20-snap.80-T1 Valid prediction for snap_scaffold_20-snap.103-T1 Sorry, intron length (3) is less than minimum required (10) Couldn't classify 107548, 107941 Couldn't classify 108581, 109413 Sorry, prediction pasa_asmbl_25498.p1 fails validation. (CTG) TC 107548-107941 GT AGG (GTA) AG 108326-108379 GT AGG (CCA) AG 108581-109413 GA CGG -recovered pasa_asmbl_25498.p1, internal, 108326, 108379 Valid prediction for GlimmerHMM_glimmerT_45318-T1 Couldn't classify 138922, 139037 Sorry, prediction pasa_asmbl_25495.p1 fails validation. (AGC) GC 138922-139037 GT CAG (AAA) AG 139344-139437 GT TTG (TTC) AG 139546-139635 GT AGG (GCG) AG 139801-139920 GT AGG (GTG) AG 140300-140476 GC GAG -recovered pasa_asmbl_25495.p1, terminal, 140300, 140476 -recovered pasa_asmbl_25495.p1, internal, 139344, 139437 -recovered pasa_asmbl_25495.p1, internal, 139546, 139635 -recovered pasa_asmbl_25495.p1, internal, 139801, 139920 -recovered pasa_asmbl_25495.p1, internal, 140300, 140476 Valid prediction for snap_scaffold_20-snap.106-T1 Valid prediction for snap_scaffold_20-snap.87-T1 Valid prediction for HiQ_model.g30077.t1 Valid prediction for Augustus_model.g30076.t1 Valid prediction for Augustus_model.g30078.t1 Valid prediction for HiQ_model.g30075.t1 Valid prediction for snap_scaffold_20-snap.85-T1 Valid prediction for GlimmerHMM_glimmerT_45330-T1 Valid prediction for snap_scaffold_20-snap.98-T1 Valid prediction for snap_scaffold_20-snap.73-T1 Valid prediction for snap_scaffold_20-snap.84-T1 Valid prediction for snap_scaffold_20-snap.113-T1 Couldn't classify 208728, 208823 Couldn't classify 216781, 216801 Sorry, prediction pasa_asmbl_25491.p1 fails validation. (ATC) AC 208728-208823 GT AAG (GTA) AG 209109-209164 GT AAG (GTT) AG 209842-209956 GT TGG (GTG) AG 210807-210907 GT AGG (AGT) AG 211999-212056 GT AGG (GTC) AG 212408-212481 GT AGG (GTT) AG 212630-213185 GT AGG (GTT) AG 213419-213457 GT AGG (TCT) AG 213795-213934 GT AGG (GAG) AG 216045-216126 GT GAG (GTG) AG 216781-216801 CA TCC -recovered pasa_asmbl_25491.p1, internal, 209109, 209164 -recovered pasa_asmbl_25491.p1, internal, 209842, 209956 -recovered pasa_asmbl_25491.p1, internal, 210807, 210907 -recovered pasa_asmbl_25491.p1, internal, 211999, 212056 -recovered pasa_asmbl_25491.p1, internal, 212408, 212481 -recovered pasa_asmbl_25491.p1, internal, 212630, 213185 -recovered pasa_asmbl_25491.p1, internal, 213419, 213457 -recovered pasa_asmbl_25491.p1, internal, 213795, 213934 -recovered pasa_asmbl_25491.p1, internal, 216045, 216126 Couldn't classify 193837, 193853 Sorry, prediction pasa_asmbl_25492.p1 fails validation. (ACC) AC 193837-193853 GT AGG (TAT) AG 194015-194191 GT CTG (GAT) AG 194426-194504 GT ACG (GAA) AG 194867-194956 GT AGG (GAC) AG 195100-195114 CC GAC -recovered pasa_asmbl_25492.p1, terminal, 195100, 195114 -recovered pasa_asmbl_25492.p1, internal, 194015, 194191 -recovered pasa_asmbl_25492.p1, internal, 194426, 194504 -recovered pasa_asmbl_25492.p1, internal, 194867, 194956 Valid prediction for snap_scaffold_20-snap.108-T1 Valid prediction for GlimmerHMM_glimmerT_45321-T1 Valid prediction for GlimmerHMM_glimmerT_45328-T1 Couldn't classify 190356, 190511 Couldn't classify 192547, 192622 Sorry, prediction pasa_asmbl_26238.p1 fails validation. (GAG) AG 190356-190511 GT AGG (GAT) AG 191274-191540 GT AGG (TGC) AG 191881-191978 GT AAG (GTT) AG 192183-192278 GT TGG (GTT) AG 192547-192622 GT AGG -recovered pasa_asmbl_26238.p1, internal, 190356, 190511 -recovered pasa_asmbl_26238.p1, internal, 191274, 191540 -recovered pasa_asmbl_26238.p1, internal, 191881, 191978 -recovered pasa_asmbl_26238.p1, internal, 192183, 192278 -recovered pasa_asmbl_26238.p1, internal, 192547, 192622 Valid prediction for CodingQuarry_transcript_30376-T1 Valid prediction for HiQ_model.g30072.t1 Valid prediction for snap_scaffold_20-snap.102-T1 Valid prediction for snap_scaffold_20-snap.79-T1 Valid prediction for GlimmerHMM_glimmerT_45339-T1 Valid prediction for HiQ_model.g30085.t1 Valid prediction for Augustus_model.g30091.t1 Valid prediction for CodingQuarry_transcript_30378-T1 Valid prediction for snap_scaffold_20-snap.88-T1 Valid prediction for snap_scaffold_20-snap.96-T1 Valid prediction for snap_scaffold_20-snap.77-T1 Valid prediction for GlimmerHMM_glimmerT_45333-T1 Valid prediction for snap_scaffold_20-snap.115-T1 Valid prediction for snap_scaffold_20-snap.112-T1 Valid prediction for snap_scaffold_20-snap.93-T1 Valid prediction for snap_scaffold_20-snap.90-T1 Valid prediction for snap_scaffold_20-snap.99-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 33722, rend_intergenic: 24457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43632, rend_intergenic: 35654 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62475, rend_intergenic: 45565 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88212, rend_intergenic: 70234 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88918, rend_intergenic: 88313 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107586, rend_intergenic: 103639 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115807, rend_intergenic: 110755 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125078, rend_intergenic: 121010 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128608, rend_intergenic: 125747 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131721, rend_intergenic: 129781 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135676, rend_intergenic: 132616 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157314, rend_intergenic: 144138 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168063, rend_intergenic: 157319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172894, rend_intergenic: 169932 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177957, rend_intergenic: 173110 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184883, rend_intergenic: 182384 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203715, rend_intergenic: 186062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213334, rend_intergenic: 210343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 220427, rend_intergenic: 214596 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224628, rend_intergenic: 221507 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238586, rend_intergenic: 224981 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 240615 -exon list size: 541 building trellis 0.2 0.4 0.6 0.7 0.9 1.1 1.3 1.5 1.7 1.8 2.0 2.2 2.4 2.6 2.8 2.9 3.1 3.3 3.5 3.7 3.9 4.1 4.2 4.4 4.6 4.8 5.0 5.2 5.3 5.5 5.7 5.9 6.1 6.3 6.4 6.6 6.8 7.0 7.2 7.4 7.6 7.7 7.9 8.1 8.3 8.5 8.7 8.8 9.0 9.2 9.4 9.6 9.8 9.9 10.1 10.3 10.5 10.7 10.9 11.0 11.2 11.4 11.6 11.8 12.0 12.2 12.3 12.5 12.7 12.9 13.1 13.3 13.4 13.6 13.8 14.0 14.2 14.4 14.5 14.7 14.9 15.1 15.3 15.5 15.7 15.8 16.0 16.2 16.4 16.6 16.8 16.9 17.1 17.3 17.5 17.7 17.9 18.0 18.2 18.4 18.6 18.8 19.0 19.2 19.3 19.5 19.7 19.9 20.1 20.3 20.4 20.6 20.8 21.0 21.2 21.4 21.5 21.7 21.9 22.1 22.3 22.5 22.7 22.8 23.0 23.2 23.4 23.6 23.8 23.9 24.1 24.3 24.5 24.7 24.9 25.0 25.2 25.4 25.6 25.8 26.0 26.2 26.3 26.5 26.7 26.9 27.1 27.3 27.4 27.6 27.8 28.0 28.2 28.4 28.5 28.7 28.9 29.1 29.3 29.5 29.7 29.8 30.0 30.2 30.4 30.6 30.8 30.9 31.1 31.3 31.5 31.7 31.9 32.0 32.2 32.4 32.6 32.8 33.0 33.1 33.3 33.5 33.7 33.9 34.1 34.3 34.4 34.6 34.8 35.0 35.2 35.4 35.5 35.7 35.9 36.1 36.3 36.5 36.6 36.8 37.0 37.2 37.4 37.6 37.8 37.9 38.1 38.3 38.5 38.7 38.9 39.0 39.2 39.4 39.6 39.8 40.0 40.1 40.3 40.5 40.7 40.9 41.1 41.3 41.4 41.6 41.8 42.0 42.2 42.4 42.5 42.7 42.9 43.1 43.3 43.5 43.6 43.8 44.0 44.2 44.4 44.6 44.8 44.9 45.1 45.3 45.5 45.7 45.9 46.0 46.2 46.4 46.6 46.8 47.0 47.1 47.3 47.5 47.7 47.9 48.1 48.3 48.4 48.6 48.8 49.0 49.2 49.4 49.5 49.7 49.9 50.1 50.3 50.5 50.6 50.8 51.0 51.2 51.4 51.6 51.7 51.9 52.1 52.3 52.5 52.7 52.9 53.0 53.2 53.4 53.6 53.8 54.0 54.1 54.3 54.5 54.7 54.9 55.1 55.2 55.4 55.6 55.8 56.0 56.2 56.4 56.5 56.7 56.9 57.1 57.3 57.5 57.6 57.8 58.0 58.2 58.4 58.6 58.7 58.9 59.1 59.3 59.5 59.7 59.9 60.0 60.2 60.4 60.6 60.8 61.0 61.1 61.3 61.5 61.7 61.9 62.1 62.2 62.4 62.6 62.8 63.0 63.2 63.4 63.5 63.7 63.9 64.1 64.3 64.5 64.6 64.8 65.0 65.2 65.4 65.6 65.7 65.9 66.1 66.3 66.5 66.7 66.9 67.0 67.2 67.4 67.6 67.8 68.0 68.1 68.3 68.5 68.7 68.9 69.1 69.2 69.4 69.6 69.8 70.0 70.2 70.3 70.5 70.7 70.9 71.1 71.3 71.5 71.6 71.8 72.0 72.2 72.4 72.6 72.7 72.9 73.1 73.3 73.5 73.7 73.8 74.0 74.2 74.4 74.6 74.8 75.0 75.1 75.3 75.5 75.7 75.9 76.1 76.2 76.4 76.6 76.8 77.0 77.2 77.3 77.5 77.7 77.9 78.1 78.3 78.5 78.6 78.8 79.0 79.2 79.4 79.6 79.7 79.9 80.1 80.3 80.5 80.7 80.8 81.0 81.2 81.4 81.6 81.8 82.0 82.1 82.3 82.5 82.7 82.9 83.1 83.2 83.4 83.6 83.8 84.0 84.2 84.3 84.5 84.7 84.9 85.1 85.3 85.5 85.6 85.8 86.0 86.2 86.4 86.6 86.7 86.9 87.1 87.3 87.5 87.7 87.8 88.0 88.2 88.4 88.6 88.8 89.0 89.1 89.3 89.5 89.7 89.9 90.1 90.2 90.4 90.6 90.8 91.0 91.2 91.3 91.5 91.7 91.9 92.1 92.3 92.4 92.6 92.8 93.0 93.2 93.4 93.6 93.7 93.9 94.1 94.3 94.5 94.7 94.8 95.0 95.2 95.4 95.6 95.8 95.9 96.1 96.3 96.5 96.7 96.9 97.1 97.2 97.4 97.6 97.8 98.0 98.2 98.3 98.5 98.7 98.9 99.1 99.3 99.4 99.6 99.8 -found 31 predictions from path traversal Error with prediction: snap lend_intergenic: 33722, rend_intergenic: 24457 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43632, rend_intergenic: 35654 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62475, rend_intergenic: 45565 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88212, rend_intergenic: 70234 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88918, rend_intergenic: 88313 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107586, rend_intergenic: 103639 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115807, rend_intergenic: 110755 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125078, rend_intergenic: 121010 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128608, rend_intergenic: 125747 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131721, rend_intergenic: 129781 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 135676, rend_intergenic: 132616 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157314, rend_intergenic: 144138 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168063, rend_intergenic: 157319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172894, rend_intergenic: 169932 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177957, rend_intergenic: 173110 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184883, rend_intergenic: 182384 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203715, rend_intergenic: 186062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213334, rend_intergenic: 210343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 220427, rend_intergenic: 214596 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224628, rend_intergenic: 221507 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238586, rend_intergenic: 224981 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 25 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 23793 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -no exons in range 1 - 23604