-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_1915429-2170425

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g30266.t1
Valid prediction for snap_scaffold_20-snap.450-T1
Valid prediction for snap_scaffold_20-snap.455-T1
Couldn't classify 136476, 136526
Sorry, prediction pasa_asmbl_26459.p1 fails validation.
(AGC)	 AG	136476-136526	GT	TGG
(GGG)	 AG	136614-136814	GT	AGG
(ACC)	 AG	137225-137275	TA	AAT
-recovered pasa_asmbl_26459.p1, terminal, 137225, 137275
-recovered pasa_asmbl_26459.p1, internal, 136476, 136526
-recovered pasa_asmbl_26459.p1, internal, 136614, 136814
Valid prediction for snap_scaffold_20-snap.441-T1
Valid prediction for snap_scaffold_20-snap.426-T1
Valid prediction for CodingQuarry_transcript_30445-T1
Valid prediction for snap_scaffold_20-snap.445-T1
Valid prediction for CodingQuarry_transcript_30450-T1
Couldn't classify 226379, 226602
Couldn't classify 227342, 227422
Sorry, prediction pasa_asmbl_26477.p1 fails validation.
(GAG)	 AG	226379-226602	GT	GGG
(GGA)	 AG	226708-226903	GT	AGG
(ACT)	 AG	227342-227422	GG	CTG
-recovered pasa_asmbl_26477.p1, internal, 226379, 226602
-recovered pasa_asmbl_26477.p1, internal, 226708, 226903
Valid prediction for GlimmerHMM_glimmerT_45554-T1
Valid prediction for snap_scaffold_20-snap.435-T1
Valid prediction for GlimmerHMM_glimmerT_45550-T1
Valid prediction for snap_scaffold_20-snap.424-T1
Valid prediction for Augustus_model.g30263.t1
Valid prediction for snap_scaffold_20-snap.454-T1
Valid prediction for snap_scaffold_20-snap.464-T1
Valid prediction for snap_scaffold_20-snap.461-T1
Valid prediction for snap_scaffold_20-snap.459-T1
Couldn't classify 159476, 159477
Sorry, prediction CodingQuarry_transcript_30448-T1 fails validation.
(ATG)	 AC	157467-157520	GT	AGG
(GAC)	 AG	157625-157668	GT	AGG
(GCT)	 AG	157935-157977	GT	AGG
(GAA)	 AG	158083-158158	GT	CGG
(AGA)	 AG	158321-158431	GT	AGG
(GCA)	 AG	158724-158793	GT	AAG
(GTT)	 AG	159272-159327	GT	CTG
(AGT)	 AG	159476-159477	TG	AGT
-recovered CodingQuarry_transcript_30448-T1, initial, 157467, 157520
-recovered CodingQuarry_transcript_30448-T1, terminal, 158321, 158431
-recovered CodingQuarry_transcript_30448-T1, internal, 157625, 157668
-recovered CodingQuarry_transcript_30448-T1, internal, 157935, 157977
-recovered CodingQuarry_transcript_30448-T1, internal, 158083, 158158
-recovered CodingQuarry_transcript_30448-T1, internal, 158321, 158431
-recovered CodingQuarry_transcript_30448-T1, internal, 158724, 158793
-recovered CodingQuarry_transcript_30448-T1, internal, 159272, 159327
Valid prediction for snap_scaffold_20-snap.440-T1
Valid prediction for GlimmerHMM_glimmerT_45542-T1
Valid prediction for snap_scaffold_20-snap.432-T1
Valid prediction for GlimmerHMM_glimmerT_45540-T1
Valid prediction for HiQ_model.g30262.t1
Valid prediction for GlimmerHMM_glimmerT_45548-T1
Valid prediction for Augustus_model.g30271.t1
Valid prediction for Augustus_model.g30260.t1
Valid prediction for Augustus_model.g30267.t1
Valid prediction for GlimmerHMM_glimmerT_45552-T1
Valid prediction for snap_scaffold_20-snap.458-T1
Couldn't classify 215649, 215794
Couldn't classify 217034, 217060
Sorry, prediction pasa_asmbl_26473.p2 fails validation.
(GGT)	 CA	215649-215794	GT	AGG
(AGG)	 AG	216301-216433	GT	GGG
(AAC)	 AG	217034-217060	AT	CCA
-recovered pasa_asmbl_26473.p2, internal, 216301, 216433
Valid prediction for snap_scaffold_20-snap.468-T1
Valid prediction for pasa_asmbl_26464.p1
Valid prediction for CodingQuarry_transcript_30447-T1
Valid prediction for snap_scaffold_20-snap.463-T1
Valid prediction for CodingQuarry_transcript_30444-T1
Valid prediction for GlimmerHMM_glimmerT_45535-T1
Valid prediction for snap_scaffold_20-snap.449-T1
Couldn't classify 193504, 193899
Couldn't classify 195162, 195306
Sorry, prediction pasa_asmbl_26469.p1 fails validation.
(AAA)	 CG	193504-193899	GT	AGG
(GCC)	 AG	194412-194584	GT	AGG
(GAA)	 AG	195162-195306	TG	GAT
-recovered pasa_asmbl_26469.p1, internal, 194412, 194584
Valid prediction for snap_scaffold_20-snap.428-T1
Valid prediction for Augustus_model.g30265.t1
Couldn't classify 220712, 220810
Sorry, prediction pasa_asmbl_26475.p1 fails validation.
(TTC)	 GT	220712-220810	GT	AGG
(GCG)	 AG	221184-221356	GT	AGG
(GTG)	 AG	221656-221863	GT	AGG
(GTA)	 AG	221915-222451	GA	AGG
-recovered pasa_asmbl_26475.p1, terminal, 221915, 222451
-recovered pasa_asmbl_26475.p1, internal, 221184, 221356
-recovered pasa_asmbl_26475.p1, internal, 221656, 221863
Valid prediction for snap_scaffold_20-snap.436-T1
Valid prediction for snap_scaffold_20-snap.456-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.434-T1
Valid prediction for GlimmerHMM_glimmerT_45544-T1
Valid prediction for GlimmerHMM_glimmerT_45531-T1
Valid prediction for CodingQuarry_transcript_30446-T1
Couldn't classify 177065, 177138
Sorry, prediction pasa_asmbl_26467.p1 fails validation.
(ATG)	 AC	175145-175348	GT	ACG
(GGA)	 AG	175523-175697	GT	GGG
(AAC)	 AG	176176-176261	GT	CGG
(GTG)	 AG	176433-176595	GT	AGG
(GTC)	 AG	177065-177138	AT	TCA
-recovered pasa_asmbl_26467.p1, initial, 175145, 175348
-recovered pasa_asmbl_26467.p1, internal, 175523, 175697
-recovered pasa_asmbl_26467.p1, internal, 176176, 176261
-recovered pasa_asmbl_26467.p1, internal, 176433, 176595
Valid prediction for GlimmerHMM_glimmerT_45545-T1
Valid prediction for Augustus_model.g30261.t1
Couldn't classify 197450, 197507
Couldn't classify 199055, 199169
Sorry, prediction pasa_asmbl_26471.p1 fails validation.
(GGG)	 CG	197450-197507	GT	AGG
(GTG)	 AG	197934-198102	GT	GGG
(CAG)	 AG	198256-198423	GT	GGG
(GAG)	 AG	198540-198848	GT	AGG
(ACA)	 AG	199055-199169	TT	AGT
-recovered pasa_asmbl_26471.p1, internal, 197934, 198102
-recovered pasa_asmbl_26471.p1, internal, 198256, 198423
-recovered pasa_asmbl_26471.p1, internal, 198540, 198848
Valid prediction for pasa_asmbl_26463.p1
Valid prediction for snap_scaffold_20-snap.430-T1
Valid prediction for GlimmerHMM_glimmerT_45551-T1
Valid prediction for Augustus_model.g30273.t1
Valid prediction for Augustus_model.g30269.t1
Valid prediction for snap_scaffold_20-snap.447-T1
Valid prediction for snap_scaffold_20-snap.443-T1
Valid prediction for Augustus_model.g30270.t1
Valid prediction for GlimmerHMM_glimmerT_45527-T1
Valid prediction for Augustus_model.g30268.t1
Valid prediction for snap_scaffold_20-snap.453-T1
Valid prediction for GlimmerHMM_glimmerT_45555-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_20-snap.446-T1
Valid prediction for Augustus_model.g30258.t1
Valid prediction for snap_scaffold_20-snap.457-T1
Valid prediction for snap_scaffold_20-snap.429-T1
Valid prediction for GlimmerHMM_glimmerT_45539-T1
Valid prediction for GlimmerHMM_glimmerT_45537-T1
Valid prediction for snap_scaffold_20-snap.452-T1
Valid prediction for GlimmerHMM_glimmerT_45547-T1
Couldn't classify 233867, 234298
Sorry, prediction pasa_asmbl_25620.p1 fails validation.
(ATG)	 AC	233867-234298	GA	GGG
Valid prediction for GlimmerHMM_glimmerT_45553-T1
Valid prediction for GlimmerHMM_glimmerT_45530-T1
Valid prediction for Augustus_model.g30254.t1
Valid prediction for Augustus_model.g30264.t1
Valid prediction for snap_scaffold_20-snap.431-T1
Valid prediction for GlimmerHMM_glimmerT_45534-T1
Valid prediction for GlimmerHMM_glimmerT_45549-T1
Valid prediction for GlimmerHMM_glimmerT_45546-T1
Valid prediction for Augustus_model.g30259.t1
Valid prediction for Augustus_model.g30255.t1
Valid prediction for snap_scaffold_20-snap.439-T1
Valid prediction for snap_scaffold_20-snap.460-T1
Valid prediction for GlimmerHMM_glimmerT_45533-T1
Valid prediction for snap_scaffold_20-snap.444-T1
Valid prediction for pasa_asmbl_25619.p1
Valid prediction for snap_scaffold_20-snap.425-T1
Valid prediction for Augustus_model.g30256.t1
Valid prediction for GlimmerHMM_glimmerT_45532-T1
Valid prediction for Augustus_model.g30257.t1
Couldn't classify 87731, 87779
Couldn't classify 90487, 90580
Sorry, prediction pasa_asmbl_25634.p1 fails validation.
(CGA)	 GT	87731-87779	GT	AGG
(CTC)	 AG	88113-88220	GT	AGG
(GCT)	 AG	88401-88489	GT	TGG
(TGT)	 AG	88748-88863	GT	AGG
(GTT)	 AG	89187-89325	GT	AGG
(CTC)	 AG	89492-89586	GT	CAG
(GAA)	 AG	89913-90015	GT	AGG
(GTT)	 AG	90299-90381	GT	AGG
(GCT)	 AG	90487-90580	AG	ATA
-recovered pasa_asmbl_25634.p1, internal, 88113, 88220
-recovered pasa_asmbl_25634.p1, internal, 88401, 88489
-recovered pasa_asmbl_25634.p1, internal, 88748, 88863
-recovered pasa_asmbl_25634.p1, internal, 89187, 89325
-recovered pasa_asmbl_25634.p1, internal, 89492, 89586
-recovered pasa_asmbl_25634.p1, internal, 89913, 90015
-recovered pasa_asmbl_25634.p1, internal, 90299, 90381
Valid prediction for snap_scaffold_20-snap.438-T1
Valid prediction for CodingQuarry_transcript_30441-T1
Valid prediction for Augustus_model.g30272.t1
Valid prediction for GlimmerHMM_glimmerT_45543-T1
Valid prediction for GlimmerHMM_glimmerT_45536-T1
Valid prediction for snap_scaffold_20-snap.433-T1
Couldn't classify 220802, 220869
Couldn't classify 224665, 224795
Sorry, prediction pasa_asmbl_25622.p1 fails validation.
(GGC)	 TG	220802-220869	GT	GTG
(GTA)	 AG	221161-221254	GT	AGG
(GGT)	 AG	221651-221703	GT	GGG
(TAT)	 AG	222180-222279	GT	GGG
(AAC)	 AG	222664-222777	GT	AGG
(ATG)	 AG	224158-224246	GT	GAG
(GTT)	 AG	224402-224550	GT	AGG
(CTT)	 AG	224665-224795	GT	AGG
-recovered pasa_asmbl_25622.p1, initial, 224158, 224246
add_exon() Sorry, pasa_asmbl_25622.p1 224402-224550-terminal-2 is invalid.
-recovered pasa_asmbl_25622.p1, terminal, 224402, 224550
-recovered pasa_asmbl_25622.p1, internal, 221161, 221254
-recovered pasa_asmbl_25622.p1, internal, 221651, 221703
-recovered pasa_asmbl_25622.p1, internal, 222180, 222279
-recovered pasa_asmbl_25622.p1, internal, 222664, 222777
-recovered pasa_asmbl_25622.p1, internal, 224158, 224246
-recovered pasa_asmbl_25622.p1, internal, 224402, 224550
-recovered pasa_asmbl_25622.p1, internal, 224665, 224795
Valid prediction for snap_scaffold_20-snap.442-T1
Valid prediction for GlimmerHMM_glimmerT_45538-T1
Couldn't classify 229097, 229308
Couldn't classify 231345, 231492
Sorry, prediction pasa_asmbl_26231.p1 fails validation.
(GAG)	 AT	229097-229308	GT	AGG
(GTT)	 AG	231345-231492	CA	TGC
Valid prediction for snap_scaffold_20-snap.448-T1
Valid prediction for snap_scaffold_20-snap.465-T1
Couldn't classify 91784, 91906
Sorry, prediction pasa_asmbl_25632.p1 fails validation.
(ATG)	 GG	90793-90870	GT	CAG
(GTG)	 AG	90990-91124	GT	CAG
(CTG)	 AG	91222-91314	GT	AGG
(GTG)	 AG	91784-91906	CC	TCC
-recovered pasa_asmbl_25632.p1, initial, 90793, 90870
-recovered pasa_asmbl_25632.p1, internal, 90990, 91124
-recovered pasa_asmbl_25632.p1, internal, 91222, 91314
Valid prediction for GlimmerHMM_glimmerT_45541-T1
Valid prediction for pasa_asmbl_25628.p1
Valid prediction for snap_scaffold_20-snap.466-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.437-T1
Couldn't classify 217619, 217677
Sorry, prediction pasa_asmbl_25624.p1 fails validation.
(GAG)	 TG	217619-217677	GT	AGG
(ACC)	 AG	217950-218099	GT	AGG
(GAT)	 AG	218207-218507	CA	GAC
-recovered pasa_asmbl_25624.p1, terminal, 218207, 218507
-recovered pasa_asmbl_25624.p1, internal, 217950, 218099
Valid prediction for snap_scaffold_20-snap.427-T1
Valid prediction for snap_scaffold_20-snap.467-T1
Valid prediction for snap_scaffold_20-snap.462-T1
Valid prediction for GlimmerHMM_glimmerT_45528-T1
Valid prediction for snap_scaffold_20-snap.451-T1
Couldn't classify 92015, 92126
Sorry, prediction pasa_asmbl_25631.p1 fails validation.
(TCA)	 CC	92015-92126	GT	AAG
(AGT)	 AG	92559-92965	TT	GAT
-recovered pasa_asmbl_25631.p1, terminal, 92559, 92965
Valid prediction for GlimmerHMM_glimmerT_45529-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20135, rend_intergenic: 5657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23687, rend_intergenic: 22602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30398, rend_intergenic: 25095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34473, rend_intergenic: 31600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37912, rend_intergenic: 35835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100027, rend_intergenic: 38705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127771, rend_intergenic: 100032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141394, rend_intergenic: 128408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151619, rend_intergenic: 148766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167325, rend_intergenic: 153783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174603, rend_intergenic: 168863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176636, rend_intergenic: 175423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183166, rend_intergenic: 177041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201579, rend_intergenic: 193303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211144, rend_intergenic: 205027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222366, rend_intergenic: 211147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225053, rend_intergenic: 222377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226791, rend_intergenic: 225124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227581, rend_intergenic: 226962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235406, rend_intergenic: 228314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245327, rend_intergenic: 242935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 253283, rend_intergenic: 251360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 254997
-exon list size: 582


building trellis

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52.2    
52.4    
52.6    
52.7    
52.9    
53.1    
53.3    
53.4    
53.6    
53.8    
53.9    
54.1    
54.3    
54.5    
54.6    
54.8    
55.0    
55.1    
55.3    
55.5    
55.7    
55.8    
56.0    
56.2    
56.3    
56.5    
56.7    
56.8    
57.0    
57.2    
57.4    
57.5    
57.7    
57.9    
58.0    
58.2    
58.4    
58.6    
58.7    
58.9    
59.1    
59.2    
59.4    
59.6    
59.8    
59.9    
60.1    
60.3    
60.4    
60.6    
60.8    
61.0    
61.1    
61.3    
61.5    
61.6    
61.8    
62.0    
62.2    
62.3    
62.5    
62.7    
62.8    
63.0    
63.2    
63.4    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.6    
64.7    
64.9    
65.1    
65.2    
65.4    
65.6    
65.8    
65.9    
66.1    
66.3    
66.4    
66.6    
66.8    
67.0    
67.1    
67.3    
67.5    
67.6    
67.8    
68.0    
68.2    
68.3    
68.5    
68.7    
68.8    
69.0    
69.2    
69.3    
69.5    
69.7    
69.9    
70.0    
70.2    
70.4    
70.5    
70.7    
70.9    
71.1    
71.2    
71.4    
71.6    
71.7    
71.9    
72.1    
72.3    
72.4    
72.6    
72.8    
72.9    
73.1    
73.3    
73.5    
73.6    
73.8    
74.0    
74.1    
74.3    
74.5    
74.7    
74.8    
75.0    
75.2    
75.3    
75.5    
75.7    
75.9    
76.0    
76.2    
76.4    
76.5    
76.7    
76.9    
77.1    
77.2    
77.4    
77.6    
77.7    
77.9    
78.1    
78.3    
78.4    
78.6    
78.8    
78.9    
79.1    
79.3    
79.5    
79.6    
79.8    
80.0    
80.1    
80.3    
80.5    
80.7    
80.8    
81.0    
81.2    
81.3    
81.5    
81.7    
81.8    
82.0    
82.2    
82.4    
82.5    
82.7    
82.9    
83.0    
83.2    
83.4    
83.6    
83.7    
83.9    
84.1    
84.2    
84.4    
84.6    
84.8    
84.9    
85.1    
85.3    
85.4    
85.6    
85.8    
86.0    
86.1    
86.3    
86.5    
86.6    
86.8    
87.0    
87.2    
87.3    
87.5    
87.7    
87.8    
88.0    
88.2    
88.4    
88.5    
88.7    
88.9    
89.0    
89.2    
89.4    
89.6    
89.7    
89.9    
90.1    
90.2    
90.4    
90.6    
90.8    
90.9    
91.1    
91.3    
91.4    
91.6    
91.8    
92.0    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.2    
93.3    
93.5    
93.7    
93.8    
94.0    
94.2    
94.3    
94.5    
94.7    
94.9    
95.0    
95.2    
95.4    
95.5    
95.7    
95.9    
96.1    
96.2    
96.4    
96.6    
96.7    
96.9    
97.1    
97.3    
97.4    
97.6    
97.8    
97.9    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.1    
99.3    
99.5    
99.7    
99.8    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 20135, rend_intergenic: 5657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23687, rend_intergenic: 22602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30398, rend_intergenic: 25095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34473, rend_intergenic: 31600  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37912, rend_intergenic: 35835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100027, rend_intergenic: 38705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127771, rend_intergenic: 100032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141394, rend_intergenic: 128408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151619, rend_intergenic: 148766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167325, rend_intergenic: 153783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174603, rend_intergenic: 168863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176636, rend_intergenic: 175423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183166, rend_intergenic: 177041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201579, rend_intergenic: 193303  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211144, rend_intergenic: 205027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222366, rend_intergenic: 211147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225053, rend_intergenic: 222377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226791, rend_intergenic: 225124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 227581, rend_intergenic: 226962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235406, rend_intergenic: 228314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245327, rend_intergenic: 242935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 253283, rend_intergenic: 251360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support