-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_20/scaffold_20_10947190-11141944

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.2334-T1
Valid prediction for HiQ_model.g31117.t1
Valid prediction for Augustus_model.g31109.t1
Valid prediction for snap_scaffold_20-snap.2320-T1
Sorry, intron length (3) is less than minimum required (10)
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g31118.t1
Valid prediction for GlimmerHMM_glimmerT_46801-T1
Valid prediction for snap_scaffold_20-snap.2318-T1
Valid prediction for GlimmerHMM_glimmerT_46777-T1
Valid prediction for GlimmerHMM_glimmerT_46791-T1
Valid prediction for GlimmerHMM_glimmerT_46786-T1
Valid prediction for Augustus_model.g31111.t1
Valid prediction for CodingQuarry_transcript_30669-T1
Valid prediction for pasa_asmbl_27008.p1
Valid prediction for GlimmerHMM_glimmerT_46788-T1
Valid prediction for snap_scaffold_20-snap.2314-T1
Valid prediction for GlimmerHMM_glimmerT_46783-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.2322-T1
Valid prediction for GlimmerHMM_glimmerT_46799-T1
Valid prediction for GlimmerHMM_glimmerT_46782-T1
Valid prediction for Augustus_model.g31119.t1
Valid prediction for GlimmerHMM_glimmerT_46790-T1
Valid prediction for snap_scaffold_20-snap.2315-T1
Valid prediction for GlimmerHMM_glimmerT_46803-T1
Valid prediction for snap_scaffold_20-snap.2313-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_30665-T1
Valid prediction for GlimmerHMM_glimmerT_46797-T1
Valid prediction for CodingQuarry_transcript_30664-T1
Valid prediction for snap_scaffold_20-snap.2309-T1
Valid prediction for Augustus_model.g31116.t1
Valid prediction for pasa_asmbl_27004.p1
Valid prediction for GlimmerHMM_glimmerT_46798-T1
Valid prediction for snap_scaffold_20-snap.2323-T1
Valid prediction for Augustus_model.g31110.t1
Valid prediction for snap_scaffold_20-snap.2321-T1
Valid prediction for GlimmerHMM_glimmerT_46794-T1
Valid prediction for Augustus_model.g31105.t1
Valid prediction for HiQ_model.g31102.t1
Valid prediction for Augustus_model.g31115.t1
Valid prediction for Augustus_model.g31114.t1
Couldn't classify 154958, 155049
Sorry, prediction pasa_asmbl_27010.p1 fails validation.
(ATG)	 CC	149265-149364	GT	TGG
(GGC)	 AG	149521-149605	GT	AGG
(GCA)	 AG	149920-150096	GT	AAG
(GGA)	 AG	150241-150326	GT	CCG
(ATG)	 AG	151847-151946	GT	AGG
(CCA)	 AG	152259-152367	GT	AGG
(CTG)	 AG	152670-152746	GT	AGG
(GCC)	 AG	152850-152945	GT	CGG
(ACT)	 AG	153070-153134	GT	TGG
(GTT)	 AG	153216-153280	GT	ATG
(TGG)	 AG	153459-153611	GT	AGG
(ATC)	 AG	153917-154070	GT	GAG
(AAT)	 AG	154319-154387	GT	GTG
(CCA)	 AG	154641-154700	GT	AGG
(ATT)	 AG	154958-155049	GT	AGG
-recovered pasa_asmbl_27010.p1, initial, 149265, 149364
add_exon() Sorry, pasa_asmbl_27010.p1 151847-151946-initial-1 is invalid.
-recovered pasa_asmbl_27010.p1, initial, 151847, 151946
-recovered pasa_asmbl_27010.p1, internal, 149521, 149605
-recovered pasa_asmbl_27010.p1, internal, 149920, 150096
-recovered pasa_asmbl_27010.p1, internal, 150241, 150326
-recovered pasa_asmbl_27010.p1, internal, 151847, 151946
-recovered pasa_asmbl_27010.p1, internal, 152259, 152367
-recovered pasa_asmbl_27010.p1, internal, 152670, 152746
-recovered pasa_asmbl_27010.p1, internal, 152850, 152945
-recovered pasa_asmbl_27010.p1, internal, 153070, 153134
-recovered pasa_asmbl_27010.p1, internal, 153216, 153280
-recovered pasa_asmbl_27010.p1, internal, 153459, 153611
-recovered pasa_asmbl_27010.p1, internal, 153917, 154070
-recovered pasa_asmbl_27010.p1, internal, 154319, 154387
-recovered pasa_asmbl_27010.p1, internal, 154641, 154700
-recovered pasa_asmbl_27010.p1, internal, 154958, 155049
Valid prediction for snap_scaffold_20-snap.2333-T1
Valid prediction for snap_scaffold_20-snap.2317-T1
Valid prediction for GlimmerHMM_glimmerT_46784-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_20-snap.2316-T1
Valid prediction for snap_scaffold_20-snap.2325-T1
Valid prediction for GlimmerHMM_glimmerT_46800-T1
Valid prediction for Augustus_model.g31106.t1
Valid prediction for snap_scaffold_20-snap.2339-T1
Valid prediction for GlimmerHMM_glimmerT_46796-T1
Valid prediction for GlimmerHMM_glimmerT_46785-T1
Valid prediction for GlimmerHMM_glimmerT_46804-T1
Valid prediction for snap_scaffold_20-snap.2319-T1
Valid prediction for Augustus_model.g31108.t1
Valid prediction for GlimmerHMM_glimmerT_46779-T1
Valid prediction for HiQ_model.g31112.t1
Valid prediction for snap_scaffold_20-snap.2332-T1
Valid prediction for pasa_asmbl_26130.p1
Valid prediction for snap_scaffold_20-snap.2338-T1
Valid prediction for snap_scaffold_20-snap.2329-T1
Valid prediction for pasa_asmbl_26139.p1
Valid prediction for GlimmerHMM_glimmerT_46793-T1
Valid prediction for snap_scaffold_20-snap.2328-T1
Valid prediction for pasa_asmbl_26136.p1
Valid prediction for Augustus_model.g31107.t1
Valid prediction for GlimmerHMM_glimmerT_46778-T1
Valid prediction for GlimmerHMM_glimmerT_46789-T1
Valid prediction for snap_scaffold_20-snap.2330-T1
Valid prediction for HiQ_model.g31113.t1
Valid prediction for GlimmerHMM_glimmerT_46787-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.2336-T1
Valid prediction for Augustus_model.g31104.t1
Valid prediction for snap_scaffold_20-snap.2335-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.2312-T1
Valid prediction for GlimmerHMM_glimmerT_46792-T1
Valid prediction for snap_scaffold_20-snap.2311-T1
Valid prediction for CodingQuarry_transcript_30666-T1
Valid prediction for snap_scaffold_20-snap.2310-T1
Valid prediction for snap_scaffold_20-snap.2337-T1
Valid prediction for snap_scaffold_20-snap.2324-T1
Valid prediction for HiQ_model.g31120.t1
Valid prediction for snap_scaffold_20-snap.2326-T1
Valid prediction for CodingQuarry_transcript_30667-T1
Valid prediction for snap_scaffold_20-snap.2308-T1
Valid prediction for GlimmerHMM_glimmerT_46780-T1
Valid prediction for CodingQuarry_transcript_30668-T1
Valid prediction for snap_scaffold_20-snap.2331-T1
Valid prediction for Augustus_model.g31103.t1
Valid prediction for snap_scaffold_20-snap.2327-T1
Valid prediction for GlimmerHMM_glimmerT_46802-T1
Valid prediction for GlimmerHMM_glimmerT_46795-T1
Valid prediction for snap_scaffold_20-snap.2307-T1
Valid prediction for GlimmerHMM_glimmerT_46781-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 95281, rend_intergenic: 94159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194755
-exon list size: 298


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.7    
3.0    
3.3    
3.7    
4.0    
4.3    
4.7    
5.0    
5.3    
5.7    
6.0    
6.3    
6.7    
7.0    
7.3    
7.7    
8.0    
8.3    
8.7    
9.0    
9.3    
9.7    
10.0    
10.3    
10.7    
11.0    
11.3    
11.7    
12.0    
12.3    
12.7    
13.0    
13.3    
13.7    
14.0    
14.3    
14.7    
15.0    
15.3    
15.7    
16.0    
16.3    
16.7    
17.0    
17.3    
17.7    
18.0    
18.3    
18.7    
19.0    
19.3    
19.7    
20.0    
20.3    
20.7    
21.0    
21.3    
21.7    
22.0    
22.3    
22.7    
23.0    
23.3    
23.7    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.3    
26.7    
27.0    
27.3    
27.7    
28.0    
28.3    
28.7    
29.0    
29.3    
29.7    
30.0    
30.3    
30.7    
31.0    
31.3    
31.7    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.7    
35.0    
35.3    
35.7    
36.0    
36.3    
36.7    
37.0    
37.3    
37.7    
38.0    
38.3    
38.7    
39.0    
39.3    
39.7    
40.0    
40.3    
40.7    
41.0    
41.3    
41.7    
42.0    
42.3    
42.7    
43.0    
43.3    
43.7    
44.0    
44.3    
44.7    
45.0    
45.3    
45.7    
46.0    
46.3    
46.7    
47.0    
47.3    
47.7    
48.0    
48.3    
48.7    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.3    
51.7    
52.0    
52.3    
52.7    
53.0    
53.3    
53.7    
54.0    
54.3    
54.7    
55.0    
55.3    
55.7    
56.0    
56.3    
56.7    
57.0    
57.3    
57.7    
58.0    
58.3    
58.7    
59.0    
59.3    
59.7    
60.0    
60.3    
60.7    
61.0    
61.3    
61.7    
62.0    
62.3    
62.7    
63.0    
63.3    
63.7    
64.0    
64.3    
64.7    
65.0    
65.3    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.3    
68.7    
69.0    
69.3    
69.7    
70.0    
70.3    
70.7    
71.0    
71.3    
71.7    
72.0    
72.3    
72.7    
73.0    
73.3    
73.7    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.3    
76.7    
77.0    
77.3    
77.7    
78.0    
78.3    
78.7    
79.0    
79.3    
79.7    
80.0    
80.3    
80.7    
81.0    
81.3    
81.7    
82.0    
82.3    
82.7    
83.0    
83.3    
83.7    
84.0    
84.3    
84.7    
85.0    
85.3    
85.7    
86.0    
86.3    
86.7    
87.0    
87.3    
87.7    
88.0    
88.3    
88.7    
89.0    
89.3    
89.7    
90.0    
90.3    
90.7    
91.0    
91.3    
91.7    
92.0    
92.3    
92.7    
93.0    
93.3    
93.7    
94.0    
94.3    
94.7    
95.0    
95.3    
95.7    
96.0    
96.3    
96.7    
97.0    
97.3    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 95281, rend_intergenic: 94159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 20148
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15294
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 183388 - 194755
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support