-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2/scaffold_2_6392807-6699806

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_3959-T1
Valid prediction for GlimmerHMM_glimmerT_3945-T1
Valid prediction for snap_scaffold_2-snap.1411-T1
Valid prediction for GlimmerHMM_glimmerT_3944-T1
Valid prediction for snap_scaffold_2-snap.1414-T1
Valid prediction for GlimmerHMM_glimmerT_3947-T1
Couldn't classify 144791, 145008
Sorry, prediction pasa_asmbl_24480.p1 fails validation.
(ATG)	 CC	142615-142748	GT	ATG
(GGT)	 AG	144262-144443	GT	AGG
(GAA)	 AG	144791-145008	TC	GCT
-recovered pasa_asmbl_24480.p1, initial, 142615, 142748
add_exon() Sorry, pasa_asmbl_24480.p1 144262-144443-terminal-2 is invalid.
-recovered pasa_asmbl_24480.p1, terminal, 144262, 144443
-recovered pasa_asmbl_24480.p1, internal, 144262, 144443
Valid prediction for pasa_asmbl_24478.p1
Valid prediction for CodingQuarry_transcript_28579-T1
Valid prediction for GlimmerHMM_glimmerT_3953-T1
Valid prediction for GlimmerHMM_glimmerT_3965-T1
Valid prediction for snap_scaffold_2-snap.1410-T1
Valid prediction for GlimmerHMM_glimmerT_3956-T1
Valid prediction for CodingQuarry_transcript_28585-T1
Valid prediction for snap_scaffold_2-snap.1412-T1
Valid prediction for GlimmerHMM_glimmerT_3960-T1
Valid prediction for HiQ_model.g2634.t1
Valid prediction for CodingQuarry_transcript_28581-T1
Valid prediction for snap_scaffold_2-snap.1413-T1
Valid prediction for snap_scaffold_2-snap.1422-T1
Valid prediction for GlimmerHMM_glimmerT_3954-T1
Valid prediction for snap_scaffold_2-snap.1436-T1
Valid prediction for snap_scaffold_2-snap.1423-T1
Valid prediction for GlimmerHMM_glimmerT_3952-T1
Valid prediction for Augustus_model.g2632.t1
Valid prediction for snap_scaffold_2-snap.1415-T1
Valid prediction for GlimmerHMM_glimmerT_3957-T1
Valid prediction for pasa_asmbl_24475.p1
Valid prediction for HiQ_model.g2648.t1
Valid prediction for Augustus_model.g2642.t1
Couldn't classify 32835, 32944
Couldn't classify 37378, 37514
Sorry, prediction pasa_asmbl_24463.p1 fails validation.
(TTG)	 AT	32835-32944	GT	AAG
(ACT)	 AG	33557-33707	GT	AGG
(GAC)	 AG	34095-34262	GT	AGG
(TTG)	 AG	34399-34461	GT	AGG
(GAC)	 AG	35298-35405	GT	GGG
(ATC)	 AG	35580-35689	GT	ACG
(GTG)	 AG	36794-36915	GT	AAG
(CCA)	 AG	37018-37155	GT	GAG
(GCA)	 AG	37378-37514	GG	ACG
add_exon() Sorry, pasa_asmbl_24463.p1 36794-36915-terminal-2 is invalid.
-recovered pasa_asmbl_24463.p1, terminal, 36794, 36915
-recovered pasa_asmbl_24463.p1, internal, 33557, 33707
-recovered pasa_asmbl_24463.p1, internal, 34095, 34262
-recovered pasa_asmbl_24463.p1, internal, 34399, 34461
-recovered pasa_asmbl_24463.p1, internal, 35298, 35405
-recovered pasa_asmbl_24463.p1, internal, 35580, 35689
-recovered pasa_asmbl_24463.p1, internal, 36794, 36915
-recovered pasa_asmbl_24463.p1, internal, 37018, 37155
Couldn't classify 41704, 41721
Sorry, prediction pasa_asmbl_24464.p1 fails validation.
(ATC)	 AC	41704-41721	GT	AGG
(ATG)	 AG	42108-42173	GT	AGG
(GTG)	 AG	42375-42510	GT	AGG
(ACT)	 AG	42856-42973	GT	AGG
(GCA)	 AG	43251-43425	GT	AGG
(GAG)	 AG	43724-43842	GT	TTG
(TGG)	 AG	44005-44084	GT	CTG
(ACC)	 AG	44324-44474	GT	GTG
(GGA)	 AG	44844-45015	TG	GAT
-recovered pasa_asmbl_24464.p1, initial, 42108, 42173
-recovered pasa_asmbl_24464.p1, terminal, 44844, 45015
-recovered pasa_asmbl_24464.p1, internal, 42108, 42173
-recovered pasa_asmbl_24464.p1, internal, 42375, 42510
-recovered pasa_asmbl_24464.p1, internal, 42856, 42973
-recovered pasa_asmbl_24464.p1, internal, 43251, 43425
-recovered pasa_asmbl_24464.p1, internal, 43724, 43842
-recovered pasa_asmbl_24464.p1, internal, 44005, 44084
-recovered pasa_asmbl_24464.p1, internal, 44324, 44474
Valid prediction for Augustus_model.g2641.t1
Valid prediction for HiQ_model.g2639.t1
Valid prediction for Augustus_model.g2646.t1
Valid prediction for snap_scaffold_2-snap.1447-T1
Valid prediction for GlimmerHMM_glimmerT_3946-T1
Valid prediction for snap_scaffold_2-snap.1429-T1
Valid prediction for snap_scaffold_2-snap.1420-T1
Couldn't classify 65926, 65942
Sorry, prediction pasa_asmbl_24467.p1 fails validation.
(ATG)	 TG	52588-52767	GT	CGG
(CCA)	 AG	53205-53412	GT	ACG
(GTT)	 AG	53690-53780	GT	AGG
(AAG)	 AG	53990-54075	GT	GGG
(AGT)	 AG	54185-54339	GT	AGG
(ATA)	 AG	54628-54729	GT	AGG
(GTG)	 AG	55200-55361	GT	AGG
(CAA)	 AG	55725-55846	GT	GGG
(GAA)	 AG	56318-56419	GT	ATG
(GAT)	 AG	56597-56683	GT	CTG
(GTT)	 AG	57036-57111	GT	AGG
(GAA)	 AG	57217-57326	GT	ATG
(GTA)	 AG	59264-59349	GT	AGG
(ACT)	 AG	59562-59687	GT	AGG
(GAG)	 AG	61608-61729	GT	AGG
(GGT)	 AG	61828-62010	GT	AGG
(TTG)	 AG	62201-62342	GT	AGG
(ATC)	 AG	62792-63015	GT	AGG
(GAG)	 AG	63277-63404	GT	CTG
(GTA)	 AG	63840-63954	GT	ACG
(GAG)	 AG	64485-64592	GT	AGG
(GAC)	 AG	64825-64941	GT	AGG
(AAC)	 AG	65046-65186	GT	AGG
(GTC)	 AG	65459-65561	GT	AGG
(GAG)	 AG	65926-65942	CC	CGC
-recovered pasa_asmbl_24467.p1, initial, 52588, 52767
add_exon() Sorry, pasa_asmbl_24467.p1 53690-53780-terminal-3 is invalid.
-recovered pasa_asmbl_24467.p1, terminal, 53690, 53780
-recovered pasa_asmbl_24467.p1, terminal, 65459, 65561
-recovered pasa_asmbl_24467.p1, internal, 53205, 53412
-recovered pasa_asmbl_24467.p1, internal, 53690, 53780
-recovered pasa_asmbl_24467.p1, internal, 53990, 54075
-recovered pasa_asmbl_24467.p1, internal, 54185, 54339
-recovered pasa_asmbl_24467.p1, internal, 54628, 54729
-recovered pasa_asmbl_24467.p1, internal, 55200, 55361
-recovered pasa_asmbl_24467.p1, internal, 55725, 55846
-recovered pasa_asmbl_24467.p1, internal, 56318, 56419
-recovered pasa_asmbl_24467.p1, internal, 56597, 56683
-recovered pasa_asmbl_24467.p1, internal, 57036, 57111
-recovered pasa_asmbl_24467.p1, internal, 57217, 57326
-recovered pasa_asmbl_24467.p1, internal, 59264, 59349
-recovered pasa_asmbl_24467.p1, internal, 59562, 59687
-recovered pasa_asmbl_24467.p1, internal, 61608, 61729
-recovered pasa_asmbl_24467.p1, internal, 61828, 62010
-recovered pasa_asmbl_24467.p1, internal, 62201, 62342
-recovered pasa_asmbl_24467.p1, internal, 62792, 63015
-recovered pasa_asmbl_24467.p1, internal, 63277, 63404
-recovered pasa_asmbl_24467.p1, internal, 63840, 63954
-recovered pasa_asmbl_24467.p1, internal, 64485, 64592
-recovered pasa_asmbl_24467.p1, internal, 64825, 64941
-recovered pasa_asmbl_24467.p1, internal, 65046, 65186
-recovered pasa_asmbl_24467.p1, internal, 65459, 65561
Valid prediction for CodingQuarry_transcript_28580-T1
Valid prediction for snap_scaffold_2-snap.1446-T1
Valid prediction for HiQ_model.g2640.t1
Valid prediction for HiQ_model.g2633.t1
Valid prediction for CodingQuarry_transcript_28586-T1
Valid prediction for snap_scaffold_2-snap.1441-T1
Valid prediction for Augustus_model.g2643.t1
Valid prediction for GlimmerHMM_glimmerT_3950-T1
Valid prediction for snap_scaffold_2-snap.1427-T1
Valid prediction for GlimmerHMM_glimmerT_3968-T1
Valid prediction for snap_scaffold_2-snap.1417-T1
Valid prediction for snap_scaffold_2-snap.1444-T1
Valid prediction for GlimmerHMM_glimmerT_3964-T1
Valid prediction for pasa_asmbl_24488.p1
Valid prediction for snap_scaffold_2-snap.1425-T1
Couldn't classify 70568, 70754
Sorry, prediction pasa_asmbl_24470.p1 fails validation.
(GAG)	 CA	70568-70754	GT	CGG
(GCT)	 AG	72933-73070	GT	AGG
(CTC)	 AG	73274-73372	GT	ATG
(ACA)	 AG	74326-74420	TA	AGT
-recovered pasa_asmbl_24470.p1, terminal, 74326, 74420
-recovered pasa_asmbl_24470.p1, internal, 72933, 73070
-recovered pasa_asmbl_24470.p1, internal, 73274, 73372
Valid prediction for GlimmerHMM_glimmerT_3961-T1
Couldn't classify 150129, 150243
Sorry, prediction pasa_asmbl_24484.p2 fails validation.
(ACG)	 GG	150129-150243	GT	CGG
(GGT)	 AG	150376-150489	GT	AGG
(GCT)	 AG	150800-150909	AC	AGA
-recovered pasa_asmbl_24484.p2, terminal, 150800, 150909
-recovered pasa_asmbl_24484.p2, internal, 150376, 150489
Valid prediction for snap_scaffold_2-snap.1432-T1
Valid prediction for HiQ_model.g2638.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_23222.p1
Valid prediction for snap_scaffold_2-snap.1426-T1
Valid prediction for snap_scaffold_2-snap.1409-T1
Valid prediction for HiQ_model.g2647.t1
Valid prediction for GlimmerHMM_glimmerT_3958-T1
Valid prediction for GlimmerHMM_glimmerT_3966-T1
Valid prediction for snap_scaffold_2-snap.1443-T1
Valid prediction for HiQ_model.g2651.t1
Valid prediction for snap_scaffold_2-snap.1416-T1
Couldn't classify 283343, 283511
Couldn't classify 284897, 285060
Sorry, prediction pasa_asmbl_23202.p1 fails validation.
(TAC)	 AG	283343-283511	GT	AGG
(GAA)	 AG	283791-283952	GT	TGG
(GCC)	 AG	284897-285060	CC	CAC
-recovered pasa_asmbl_23202.p1, internal, 283343, 283511
-recovered pasa_asmbl_23202.p1, internal, 283791, 283952
Valid prediction for CodingQuarry_transcript_28583-T1
Valid prediction for snap_scaffold_2-snap.1448-T1
Valid prediction for Augustus_model.g2645.t1
Valid prediction for CodingQuarry_transcript_28587-T1
Valid prediction for GlimmerHMM_glimmerT_3971-T1
Valid prediction for GlimmerHMM_glimmerT_3962-T1
Valid prediction for snap_scaffold_2-snap.1439-T1
Valid prediction for snap_scaffold_2-snap.1424-T1
Valid prediction for GlimmerHMM_glimmerT_3967-T1
Valid prediction for snap_scaffold_2-snap.1434-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_3972-T1
Valid prediction for snap_scaffold_2-snap.1408-T1
Valid prediction for snap_scaffold_2-snap.1442-T1
Valid prediction for snap_scaffold_2-snap.1405-T1
Valid prediction for CodingQuarry_transcript_28584-T1
Valid prediction for snap_scaffold_2-snap.1435-T1
Valid prediction for snap_scaffold_2-snap.1445-T1
Valid prediction for HiQ_model.g2637.t1
Valid prediction for snap_scaffold_2-snap.1438-T1
Valid prediction for GlimmerHMM_glimmerT_3963-T1
Valid prediction for snap_scaffold_2-snap.1440-T1
Couldn't classify 283189, 283225
Sorry, prediction pasa_asmbl_23203.p1 fails validation.
(ATG)	 AG	281083-281208	GT	AGG
(TCA)	 AG	282163-282311	GT	ATG
(GGC)	 AG	282917-283042	GT	AGG
(TAT)	 AG	283189-283225	AC	GGA
-recovered pasa_asmbl_23203.p1, initial, 281083, 281208
-recovered pasa_asmbl_23203.p1, internal, 281083, 281208
-recovered pasa_asmbl_23203.p1, internal, 282163, 282311
-recovered pasa_asmbl_23203.p1, internal, 282917, 283042
Valid prediction for snap_scaffold_2-snap.1431-T1
Valid prediction for pasa_asmbl_23213.p1
Valid prediction for CodingQuarry_transcript_28578-T1
Valid prediction for Augustus_model.g2635.t1
Valid prediction for snap_scaffold_2-snap.1449-T1
Valid prediction for GlimmerHMM_glimmerT_3943-T1
Valid prediction for snap_scaffold_2-snap.1450-T1
Valid prediction for GlimmerHMM_glimmerT_3942-T1
Valid prediction for snap_scaffold_2-snap.1421-T1
Valid prediction for HiQ_model.g2630.t1
Valid prediction for snap_scaffold_2-snap.1430-T1
Valid prediction for snap_scaffold_2-snap.1406-T1
Valid prediction for Augustus_model.g2644.t1
Valid prediction for GlimmerHMM_glimmerT_3969-T1
Valid prediction for GlimmerHMM_glimmerT_3970-T1
Valid prediction for CodingQuarry_transcript_28582-T1
Valid prediction for Augustus_model.g2636.t1
Valid prediction for Augustus_model.g2649.t1
Valid prediction for GlimmerHMM_glimmerT_3948-T1
Valid prediction for GlimmerHMM_glimmerT_3951-T1
Valid prediction for GlimmerHMM_glimmerT_3949-T1
Valid prediction for Augustus_model.g2631.t1
Valid prediction for pasa_asmbl_23206.p1
Valid prediction for CodingQuarry_transcript_28576-T1
Valid prediction for snap_scaffold_2-snap.1437-T1
Valid prediction for CodingQuarry_transcript_28577-T1
Valid prediction for snap_scaffold_2-snap.1428-T1
Valid prediction for snap_scaffold_2-snap.1419-T1
Valid prediction for snap_scaffold_2-snap.1407-T1
Couldn't classify 285205, 285273
Sorry, prediction pasa_asmbl_23201.p1 fails validation.
(GTC)	 AC	285205-285273	GT	AGG
(GGT)	 AG	285787-285925	GT	AGG
(GAG)	 AG	287024-287174	GT	AGG
(GTA)	 AG	287362-287477	GT	TGG
(CGT)	 AG	288651-289162	GG	GAG
-recovered pasa_asmbl_23201.p1, terminal, 288651, 289162
-recovered pasa_asmbl_23201.p1, internal, 285787, 285925
-recovered pasa_asmbl_23201.p1, internal, 287024, 287174
-recovered pasa_asmbl_23201.p1, internal, 287362, 287477
Valid prediction for Augustus_model.g2650.t1
Valid prediction for snap_scaffold_2-snap.1418-T1
Couldn't classify 66655, 66816
Sorry, prediction pasa_asmbl_23215.p1 fails validation.
(ATG)	 GC	66398-66547	GT	GGG
(CAG)	 AG	66655-66816	AC	CCA
-recovered pasa_asmbl_23215.p1, initial, 66398, 66547
Valid prediction for snap_scaffold_2-snap.1433-T1
Valid prediction for GlimmerHMM_glimmerT_3955-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 84340, rend_intergenic: 82409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92462, rend_intergenic: 84808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150909, rend_intergenic: 146225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157924, rend_intergenic: 157166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165511, rend_intergenic: 158459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174824, rend_intergenic: 168842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178166, rend_intergenic: 174964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201042, rend_intergenic: 180360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201699, rend_intergenic: 201689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 236099, rend_intergenic: 229187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 275723, rend_intergenic: 267282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281550, rend_intergenic: 279097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 307000
-exon list size: 535


building trellis

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57.0    
57.2    
57.4    
57.5    
57.7    
57.9    
58.1    
58.3    
58.5    
58.7    
58.8    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.1    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.6    
61.8    
62.0    
62.2    
62.4    
62.6    
62.8    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.1    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.4    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.2    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.6    
69.8    
70.0    
70.2    
70.4    
70.6    
70.8    
70.9    
71.1    
71.3    
71.5    
71.7    
71.9    
72.1    
72.3    
72.4    
72.6    
72.8    
73.0    
73.2    
73.4    
73.6    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.7    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.4    
80.6    
80.8    
81.0    
81.2    
81.4    
81.6    
81.8    
81.9    
82.1    
82.3    
82.5    
82.7    
82.9    
83.1    
83.2    
83.4    
83.6    
83.8    
84.0    
84.2    
84.4    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.8    
86.0    
86.2    
86.4    
86.6    
86.8    
87.0    
87.2    
87.3    
87.5    
87.7    
87.9    
88.1    
88.3    
88.5    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
89.9    
90.1    
90.3    
90.5    
90.7    
90.9    
91.1    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.6    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.0    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.3    
95.5    
95.7    
95.9    
96.1    
96.3    
96.5    
96.6    
96.8    
97.0    
97.2    
97.4    
97.6    
97.8    
98.0    
98.1    
98.3    
98.5    
98.7    
98.9    
99.1    
99.3    
99.4    
99.6    
99.8    
-found 37 predictions from path traversal
Error with prediction: snap lend_intergenic: 84340, rend_intergenic: 82409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92462, rend_intergenic: 84808  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150909, rend_intergenic: 146225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157924, rend_intergenic: 157166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165511, rend_intergenic: 158459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174824, rend_intergenic: 168842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178166, rend_intergenic: 174964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201042, rend_intergenic: 180360  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201699, rend_intergenic: 201689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 236099, rend_intergenic: 229187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 275723, rend_intergenic: 267282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281550, rend_intergenic: 279097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 33 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 292354 - 307000
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 292354 - 302734
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support