-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2/scaffold_2_20444117-20470143

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_5813-T1
Valid prediction for GlimmerHMM_glimmerT_5812-T1
Valid prediction for snap_scaffold_2-snap.4002-T1
Valid prediction for snap_scaffold_2-snap.4003-T1
Valid prediction for snap_scaffold_2-snap.4005-T1
Valid prediction for snap_scaffold_2-snap.4004-T1
Valid prediction for snap_scaffold_2-snap.4006-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2-snap.4001-T1
Valid prediction for GlimmerHMM_glimmerT_5811-T1
Couldn't classify 19991, 20302
Couldn't classify 20912, 21017
Sorry, prediction pasa_asmbl_24020.p1 fails validation.
(TGC)	 AG	19991-20302	GT	AGG
(GAA)	 AG	20736-20830	GT	AGG
(CCA)	 AG	20912-21017	GC	ATG
add_exon() Sorry, pasa_asmbl_24020.p1 20736-20830-terminal-2 is invalid.
-recovered pasa_asmbl_24020.p1, terminal, 20736, 20830
-recovered pasa_asmbl_24020.p1, internal, 19991, 20302
-recovered pasa_asmbl_24020.p1, internal, 20736, 20830
-recovered pasa_asmbl_24020.p1, internal, 20912, 21017

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8104, rend_intergenic: 4306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 26027
-exon list size: 46


building trellis

2.1    
4.2    
6.2    
8.3    
10.4    
12.5    
14.6    
16.7    
18.8    
20.8    
22.9    
25.0    
27.1    
29.2    
31.2    
33.3    
35.4    
37.5    
39.6    
41.7    
43.8    
45.8    
47.9    
50.0    
52.1    
54.2    
56.2    
58.3    
60.4    
62.5    
64.6    
66.7    
68.8    
70.8    
72.9    
75.0    
77.1    
79.2    
81.2    
83.3    
85.4    
87.5    
89.6    
91.7    
93.8    
95.8    
97.9    
-found 5 predictions from path traversal
Error with prediction: snap lend_intergenic: 8104, rend_intergenic: 4306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support