-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2/scaffold_2_1855686-1994249

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2-snap.440-T1
Valid prediction for GlimmerHMM_glimmerT_3283-T1
Valid prediction for snap_scaffold_2-snap.450-T1
Valid prediction for Augustus_model.g2215.t1
Valid prediction for GlimmerHMM_glimmerT_3278-T1
Valid prediction for snap_scaffold_2-snap.464-T1
Valid prediction for Augustus_model.g2206.t1
Valid prediction for Augustus_model.g2209.t1
Valid prediction for snap_scaffold_2-snap.448-T1
Valid prediction for snap_scaffold_2-snap.434-T1
Valid prediction for Augustus_model.g2212.t1
Valid prediction for GlimmerHMM_glimmerT_3287-T1
Valid prediction for Augustus_model.g2218.t1
Valid prediction for GlimmerHMM_glimmerT_3301-T1
Valid prediction for GlimmerHMM_glimmerT_3281-T1
Valid prediction for snap_scaffold_2-snap.458-T1
Valid prediction for GlimmerHMM_glimmerT_3293-T1
Valid prediction for snap_scaffold_2-snap.460-T1
Valid prediction for snap_scaffold_2-snap.441-T1
Valid prediction for snap_scaffold_2-snap.443-T1
Valid prediction for snap_scaffold_2-snap.462-T1
Valid prediction for Augustus_model.g2216.t1
Valid prediction for snap_scaffold_2-snap.473-T1
Valid prediction for GlimmerHMM_glimmerT_3275-T1
Valid prediction for GlimmerHMM_glimmerT_3302-T1
Valid prediction for snap_scaffold_2-snap.438-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g2211.t1
Valid prediction for GlimmerHMM_glimmerT_3282-T1
Valid prediction for GlimmerHMM_glimmerT_3276-T1
Valid prediction for Augustus_model.g2207.t1
Valid prediction for snap_scaffold_2-snap.472-T1
Valid prediction for snap_scaffold_2-snap.465-T1
Valid prediction for GlimmerHMM_glimmerT_3279-T1
Valid prediction for Augustus_model.g2210.t1
Valid prediction for snap_scaffold_2-snap.469-T1
Valid prediction for Augustus_model.g2208.t1
Valid prediction for snap_scaffold_2-snap.475-T1
Valid prediction for Augustus_model.g2213.t1
Valid prediction for GlimmerHMM_glimmerT_3280-T1
Valid prediction for snap_scaffold_2-snap.455-T1
Valid prediction for GlimmerHMM_glimmerT_3274-T1
Valid prediction for GlimmerHMM_glimmerT_3297-T1
Valid prediction for GlimmerHMM_glimmerT_3291-T1
Valid prediction for snap_scaffold_2-snap.467-T1
Valid prediction for snap_scaffold_2-snap.445-T1
Valid prediction for snap_scaffold_2-snap.456-T1
Valid prediction for GlimmerHMM_glimmerT_3294-T1
Valid prediction for GlimmerHMM_glimmerT_3300-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2-snap.442-T1
Valid prediction for snap_scaffold_2-snap.459-T1
Valid prediction for snap_scaffold_2-snap.466-T1
Valid prediction for snap_scaffold_2-snap.435-T1
Valid prediction for GlimmerHMM_glimmerT_3289-T1
Valid prediction for GlimmerHMM_glimmerT_3277-T1
Valid prediction for snap_scaffold_2-snap.449-T1
Valid prediction for Augustus_model.g2219.t1
Valid prediction for GlimmerHMM_glimmerT_3286-T1
Valid prediction for snap_scaffold_2-snap.439-T1
Valid prediction for GlimmerHMM_glimmerT_3288-T1
Valid prediction for snap_scaffold_2-snap.446-T1
Valid prediction for GlimmerHMM_glimmerT_3284-T1
Valid prediction for GlimmerHMM_glimmerT_3298-T1
Valid prediction for snap_scaffold_2-snap.436-T1
Valid prediction for snap_scaffold_2-snap.474-T1
Valid prediction for snap_scaffold_2-snap.447-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_2-snap.463-T1
Valid prediction for snap_scaffold_2-snap.451-T1
Valid prediction for GlimmerHMM_glimmerT_3285-T1
Valid prediction for Augustus_model.g2214.t1
Valid prediction for GlimmerHMM_glimmerT_3273-T1
Valid prediction for GlimmerHMM_glimmerT_3303-T1
Valid prediction for snap_scaffold_2-snap.453-T1
Valid prediction for snap_scaffold_2-snap.461-T1
Valid prediction for snap_scaffold_2-snap.452-T1
Valid prediction for snap_scaffold_2-snap.471-T1
Valid prediction for GlimmerHMM_glimmerT_3290-T1
Valid prediction for GlimmerHMM_glimmerT_3296-T1
Valid prediction for snap_scaffold_2-snap.454-T1
Valid prediction for snap_scaffold_2-snap.470-T1
Valid prediction for Augustus_model.g2217.t1
Valid prediction for snap_scaffold_2-snap.444-T1
Valid prediction for snap_scaffold_2-snap.468-T1
Valid prediction for snap_scaffold_2-snap.476-T1
Valid prediction for snap_scaffold_2-snap.457-T1
Valid prediction for GlimmerHMM_glimmerT_3299-T1
Valid prediction for snap_scaffold_2-snap.437-T1
Valid prediction for GlimmerHMM_glimmerT_3295-T1
Valid prediction for GlimmerHMM_glimmerT_3292-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3291, rend_intergenic: 1531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10532, rend_intergenic: 10163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13826, rend_intergenic: 10712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25972, rend_intergenic: 24590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37766, rend_intergenic: 29798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46053, rend_intergenic: 42579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51865, rend_intergenic: 46495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66413, rend_intergenic: 52111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68654, rend_intergenic: 66531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74128, rend_intergenic: 71359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78301, rend_intergenic: 74784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82265, rend_intergenic: 78659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93211, rend_intergenic: 90834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101023, rend_intergenic: 95829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104171, rend_intergenic: 101880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112506, rend_intergenic: 110377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128169, rend_intergenic: 122544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131613, rend_intergenic: 129707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 138564
-exon list size: 290


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.1    
2.4    
2.7    
3.1    
3.4    
3.8    
4.1    
4.5    
4.8    
5.1    
5.5    
5.8    
6.2    
6.5    
6.8    
7.2    
7.5    
7.9    
8.2    
8.6    
8.9    
9.2    
9.6    
9.9    
10.3    
10.6    
11.0    
11.3    
11.6    
12.0    
12.3    
12.7    
13.0    
13.4    
13.7    
14.0    
14.4    
14.7    
15.1    
15.4    
15.8    
16.1    
16.4    
16.8    
17.1    
17.5    
17.8    
18.2    
18.5    
18.8    
19.2    
19.5    
19.9    
20.2    
20.5    
20.9    
21.2    
21.6    
21.9    
22.3    
22.6    
22.9    
23.3    
23.6    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.4    
26.7    
27.1    
27.4    
27.7    
28.1    
28.4    
28.8    
29.1    
29.5    
29.8    
30.1    
30.5    
30.8    
31.2    
31.5    
31.8    
32.2    
32.5    
32.9    
33.2    
33.6    
33.9    
34.2    
34.6    
34.9    
35.3    
35.6    
36.0    
36.3    
36.6    
37.0    
37.3    
37.7    
38.0    
38.4    
38.7    
39.0    
39.4    
39.7    
40.1    
40.4    
40.8    
41.1    
41.4    
41.8    
42.1    
42.5    
42.8    
43.2    
43.5    
43.8    
44.2    
44.5    
44.9    
45.2    
45.5    
45.9    
46.2    
46.6    
46.9    
47.3    
47.6    
47.9    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.1    
52.4    
52.7    
53.1    
53.4    
53.8    
54.1    
54.5    
54.8    
55.1    
55.5    
55.8    
56.2    
56.5    
56.8    
57.2    
57.5    
57.9    
58.2    
58.6    
58.9    
59.2    
59.6    
59.9    
60.3    
60.6    
61.0    
61.3    
61.6    
62.0    
62.3    
62.7    
63.0    
63.4    
63.7    
64.0    
64.4    
64.7    
65.1    
65.4    
65.8    
66.1    
66.4    
66.8    
67.1    
67.5    
67.8    
68.2    
68.5    
68.8    
69.2    
69.5    
69.9    
70.2    
70.5    
70.9    
71.2    
71.6    
71.9    
72.3    
72.6    
72.9    
73.3    
73.6    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.4    
76.7    
77.1    
77.4    
77.7    
78.1    
78.4    
78.8    
79.1    
79.5    
79.8    
80.1    
80.5    
80.8    
81.2    
81.5    
81.8    
82.2    
82.5    
82.9    
83.2    
83.6    
83.9    
84.2    
84.6    
84.9    
85.3    
85.6    
86.0    
86.3    
86.6    
87.0    
87.3    
87.7    
88.0    
88.4    
88.7    
89.0    
89.4    
89.7    
90.1    
90.4    
90.8    
91.1    
91.4    
91.8    
92.1    
92.5    
92.8    
93.2    
93.5    
93.8    
94.2    
94.5    
94.9    
95.2    
95.5    
95.9    
96.2    
96.6    
96.9    
97.3    
97.6    
97.9    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 3291, rend_intergenic: 1531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10532, rend_intergenic: 10163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13826, rend_intergenic: 10712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25972, rend_intergenic: 24590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37766, rend_intergenic: 29798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46053, rend_intergenic: 42579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51865, rend_intergenic: 46495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66413, rend_intergenic: 52111  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68654, rend_intergenic: 66531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74128, rend_intergenic: 71359  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78301, rend_intergenic: 74784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82265, rend_intergenic: 78659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93211, rend_intergenic: 90834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101023, rend_intergenic: 95829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104171, rend_intergenic: 101880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112506, rend_intergenic: 110377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128169, rend_intergenic: 122544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131613, rend_intergenic: 129707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support