-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2/scaffold_2_18460480-18653826

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2-snap.3592-T1
Valid prediction for snap_scaffold_2-snap.3616-T1
Valid prediction for snap_scaffold_2-snap.3597-T1
Valid prediction for GlimmerHMM_glimmerT_5558-T1
Valid prediction for GlimmerHMM_glimmerT_5537-T1
Valid prediction for GlimmerHMM_glimmerT_5550-T1
Valid prediction for snap_scaffold_2-snap.3627-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g3725.t1
Valid prediction for snap_scaffold_2-snap.3625-T1
Valid prediction for snap_scaffold_2-snap.3605-T1
Valid prediction for HiQ_model.g3734.t1
Valid prediction for Augustus_model.g3729.t1
Valid prediction for snap_scaffold_2-snap.3608-T1
Valid prediction for snap_scaffold_2-snap.3634-T1
Valid prediction for Augustus_model.g3721.t1
Valid prediction for snap_scaffold_2-snap.3621-T1
Valid prediction for snap_scaffold_2-snap.3599-T1
Valid prediction for Augustus_model.g3735.t1
Valid prediction for snap_scaffold_2-snap.3610-T1
Valid prediction for GlimmerHMM_glimmerT_5557-T1
Valid prediction for snap_scaffold_2-snap.3589-T1
Valid prediction for Augustus_model.g3732.t1
Valid prediction for snap_scaffold_2-snap.3632-T1
Couldn't classify 97608, 98708
Sorry, prediction pasa_asmbl_23923.p1 fails validation.
(GTC)	 GA	97608-98708	AA	CAA
Valid prediction for snap_scaffold_2-snap.3602-T1
Valid prediction for GlimmerHMM_glimmerT_5547-T1
Valid prediction for pasa_asmbl_25226.p1
Valid prediction for Augustus_model.g3717.t1
Valid prediction for GlimmerHMM_glimmerT_5556-T1
Valid prediction for snap_scaffold_2-snap.3590-T1
Valid prediction for snap_scaffold_2-snap.3614-T1
Valid prediction for GlimmerHMM_glimmerT_5546-T1
Valid prediction for Augustus_model.g3726.t1
Valid prediction for snap_scaffold_2-snap.3624-T1
Valid prediction for Augustus_model.g3731.t1
Valid prediction for snap_scaffold_2-snap.3619-T1
Valid prediction for Augustus_model.g3727.t1
Valid prediction for snap_scaffold_2-snap.3612-T1
Valid prediction for snap_scaffold_2-snap.3601-T1
Valid prediction for GlimmerHMM_glimmerT_5539-T1
Valid prediction for GlimmerHMM_glimmerT_5538-T1
Valid prediction for snap_scaffold_2-snap.3594-T1
Valid prediction for snap_scaffold_2-snap.3607-T1
Valid prediction for GlimmerHMM_glimmerT_5552-T1
Valid prediction for snap_scaffold_2-snap.3630-T1
Valid prediction for GlimmerHMM_glimmerT_5551-T1
Valid prediction for snap_scaffold_2-snap.3617-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g3730.t1
Valid prediction for GlimmerHMM_glimmerT_5544-T1
Valid prediction for snap_scaffold_2-snap.3595-T1
Valid prediction for Augustus_model.g3724.t1
Valid prediction for snap_scaffold_2-snap.3631-T1
Valid prediction for snap_scaffold_2-snap.3626-T1
Valid prediction for Augustus_model.g3723.t1
Valid prediction for GlimmerHMM_glimmerT_5535-T1
Valid prediction for snap_scaffold_2-snap.3636-T1
Valid prediction for snap_scaffold_2-snap.3606-T1
Valid prediction for Augustus_model.g3720.t1
Valid prediction for snap_scaffold_2-snap.3615-T1
Valid prediction for Augustus_model.g3736.t1
Valid prediction for snap_scaffold_2-snap.3609-T1
Valid prediction for snap_scaffold_2-snap.3623-T1
Valid prediction for snap_scaffold_2-snap.3604-T1
Couldn't classify 25118, 25454
Couldn't classify 26821, 27246
Sorry, prediction pasa_asmbl_23810.p1 fails validation.
(CTT)	 GA	25118-25454	GT	AAG
(AAA)	 AG	25895-26374	GT	AGG
(GTG)	 AG	26507-26598	GT	AAG
(TCT)	 AG	26821-27246	GA	GGG
-recovered pasa_asmbl_23810.p1, internal, 25895, 26374
-recovered pasa_asmbl_23810.p1, internal, 26507, 26598
Valid prediction for GlimmerHMM_glimmerT_5543-T1
Valid prediction for snap_scaffold_2-snap.3622-T1
Valid prediction for snap_scaffold_2-snap.3600-T1
Valid prediction for snap_scaffold_2-snap.3598-T1
Valid prediction for snap_scaffold_2-snap.3591-T1
Valid prediction for GlimmerHMM_glimmerT_5548-T1
Valid prediction for GlimmerHMM_glimmerT_5542-T1
Valid prediction for GlimmerHMM_glimmerT_5560-T1
Valid prediction for Augustus_model.g3718.t1
Valid prediction for CodingQuarry_transcript_28840-T1
Valid prediction for GlimmerHMM_glimmerT_5559-T1
Valid prediction for GlimmerHMM_glimmerT_5541-T1
Valid prediction for snap_scaffold_2-snap.3618-T1
Valid prediction for GlimmerHMM_glimmerT_5545-T1
Valid prediction for Augustus_model.g3728.t1
Couldn't classify 111474, 111548
Sorry, prediction pasa_asmbl_23792.p1 fails validation.
(GAT)	 AC	111474-111548	GT	CTG
(GGT)	 AG	111763-111897	GT	GGG
(GTG)	 AG	112419-112541	GT	GTG
(GAG)	 AG	112885-113048	GT	AGG
(CGC)	 AG	113313-113448	GT	AGG
(TGC)	 AG	114029-114149	GT	AGG
(ATA)	 AG	114716-114738	AG	AAA
-recovered pasa_asmbl_23792.p1, terminal, 114716, 114738
-recovered pasa_asmbl_23792.p1, internal, 111763, 111897
-recovered pasa_asmbl_23792.p1, internal, 112419, 112541
-recovered pasa_asmbl_23792.p1, internal, 112885, 113048
-recovered pasa_asmbl_23792.p1, internal, 113313, 113448
-recovered pasa_asmbl_23792.p1, internal, 114029, 114149
Couldn't classify 36885, 37116
Couldn't classify 41719, 41760
Sorry, prediction pasa_asmbl_23807.p1 fails validation.
(CTT)	 CT	36885-37116	GT	AGG
(ATG)	 AG	37401-37506	GT	CGG
(CTA)	 AG	37802-38000	GT	AGG
(GAG)	 AG	38322-38416	GT	CGG
(GTT)	 AG	38687-38794	GT	TGG
(CTG)	 AG	39017-39121	GT	GAG
(TTA)	 AG	39540-39705	GT	AGG
(GTG)	 AG	39847-39947	GT	AGG
(GTT)	 AG	40352-40453	GT	ATG
(AGC)	 AG	41081-41120	GT	AGG
(GTA)	 AG	41719-41760	TG	TGT
-recovered pasa_asmbl_23807.p1, initial, 37401, 37506
-recovered pasa_asmbl_23807.p1, internal, 37401, 37506
-recovered pasa_asmbl_23807.p1, internal, 37802, 38000
-recovered pasa_asmbl_23807.p1, internal, 38322, 38416
-recovered pasa_asmbl_23807.p1, internal, 38687, 38794
-recovered pasa_asmbl_23807.p1, internal, 39017, 39121
-recovered pasa_asmbl_23807.p1, internal, 39540, 39705
-recovered pasa_asmbl_23807.p1, internal, 39847, 39947
-recovered pasa_asmbl_23807.p1, internal, 40352, 40453
-recovered pasa_asmbl_23807.p1, internal, 41081, 41120
Valid prediction for snap_scaffold_2-snap.3596-T1
Valid prediction for CodingQuarry_transcript_28844-T1
Couldn't classify 118525, 118552
Couldn't classify 121351, 121536
Sorry, prediction pasa_asmbl_23788.p1 fails validation.
(AGC)	 AG	118525-118552	GT	GGG
(GGA)	 AG	120123-120263	GT	AGG
(CTC)	 AG	120817-120980	GT	CGG
(ATC)	 AG	121351-121536	GG	AGG
-recovered pasa_asmbl_23788.p1, internal, 118525, 118552
-recovered pasa_asmbl_23788.p1, internal, 120123, 120263
-recovered pasa_asmbl_23788.p1, internal, 120817, 120980
Valid prediction for snap_scaffold_2-snap.3628-T1
Valid prediction for snap_scaffold_2-snap.3611-T1
Valid prediction for snap_scaffold_2-snap.3603-T1
Valid prediction for HiQ_model.g3719.t1
Valid prediction for GlimmerHMM_glimmerT_5549-T1
Valid prediction for snap_scaffold_2-snap.3593-T1
Sorry, intron length (4) is less than minimum required (10)
Couldn't classify 118366, 118521
Sorry, prediction pasa_asmbl_23790.p1 fails validation.
(ATG)	 AA	117836-117964	GT	AGG
(GTG)	 AG	118366-118521	GA	TTG
-recovered pasa_asmbl_23790.p1, initial, 117836, 117964
Valid prediction for snap_scaffold_2-snap.3620-T1
Couldn't classify 121816, 122508
Sorry, prediction pasa_asmbl_23787.p1 fails validation.
(CCC)	 AC	121816-122508	AC	GAA
Valid prediction for CodingQuarry_transcript_28843-T1
Couldn't classify 104597, 104846
Couldn't classify 110277, 110383
Sorry, prediction pasa_asmbl_23793.p1 fails validation.
(TCT)	 CC	104597-104846	GT	AAG
(CCC)	 AG	105809-106102	GT	CAG
(AGC)	 AG	107639-107911	GT	CCG
(GCC)	 AG	108393-108542	GT	CGG
(ACA)	 AG	108881-109286	GT	AGG
(GAT)	 AG	109501-109598	GT	AGG
(AGC)	 AG	110277-110383	TA	TGT
-recovered pasa_asmbl_23793.p1, internal, 105809, 106102
-recovered pasa_asmbl_23793.p1, internal, 107639, 107911
-recovered pasa_asmbl_23793.p1, internal, 108393, 108542
-recovered pasa_asmbl_23793.p1, internal, 108881, 109286
-recovered pasa_asmbl_23793.p1, internal, 109501, 109598
Valid prediction for HiQ_model.g3722.t1
Valid prediction for snap_scaffold_2-snap.3613-T1
Valid prediction for GlimmerHMM_glimmerT_5536-T1
Valid prediction for GlimmerHMM_glimmerT_5555-T1
Valid prediction for pasa_asmbl_23785.p1
Couldn't classify 73482, 73530
Couldn't classify 74968, 75230
Sorry, prediction pasa_asmbl_23796.p1 fails validation.
(ACG)	 TG	73482-73530	GT	AGG
(TTC)	 AG	74528-74791	GT	AGG
(TGC)	 AG	74968-75230	CG	TGC
-recovered pasa_asmbl_23796.p1, internal, 74528, 74791
Couldn't classify 103977, 104026
Sorry, prediction pasa_asmbl_23794.p1 fails validation.
(ATG)	 CT	100036-100162	GT	ACG
(AAC)	 AG	101004-101267	GT	CTG
(TTC)	 AG	101549-101812	GT	AGG
(TCC)	 AG	102223-102486	GT	TGG
(TCC)	 AG	103512-103781	GT	ACG
(GTC)	 AG	103977-104026	CT	GCC
-recovered pasa_asmbl_23794.p1, initial, 100036, 100162
-recovered pasa_asmbl_23794.p1, internal, 101004, 101267
-recovered pasa_asmbl_23794.p1, internal, 101549, 101812
-recovered pasa_asmbl_23794.p1, internal, 102223, 102486
-recovered pasa_asmbl_23794.p1, internal, 103512, 103781
Valid prediction for GlimmerHMM_glimmerT_5540-T1
Valid prediction for pasa_asmbl_23811.p1
Couldn't classify 29029, 29034
Couldn't classify 35941, 36129
Sorry, prediction pasa_asmbl_23809.p1 fails validation.
(CTG)	 CG	29029-29034	GT	TGG
(CTC)	 AG	29192-29332	GT	AGG
(GCT)	 AG	29496-29608	GT	AGG
(TCG)	 AG	29894-30031	GT	AGG
(GGA)	 AG	30200-30374	GT	AGG
(GTG)	 AG	30561-30689	GT	AGG
(CCC)	 AG	30851-31372	GT	AGG
(GCC)	 AG	31794-31868	GT	AGG
(GTG)	 AG	32068-32177	GT	AGG
(ATT)	 AG	32264-32395	GT	TGG
(GCA)	 AG	32824-32945	GT	AGG
(AAA)	 AG	33120-33221	GT	TAG
(TCC)	 AG	34245-34373	GT	TGG
(ACG)	 AG	35077-35254	GT	ACG
(GTC)	 AG	35380-35566	GT	CGG
(TAC)	 AG	35941-36129	GT	AGG
-recovered pasa_asmbl_23809.p1, internal, 29192, 29332
-recovered pasa_asmbl_23809.p1, internal, 29496, 29608
-recovered pasa_asmbl_23809.p1, internal, 29894, 30031
-recovered pasa_asmbl_23809.p1, internal, 30200, 30374
-recovered pasa_asmbl_23809.p1, internal, 30561, 30689
-recovered pasa_asmbl_23809.p1, internal, 30851, 31372
-recovered pasa_asmbl_23809.p1, internal, 31794, 31868
-recovered pasa_asmbl_23809.p1, internal, 32068, 32177
-recovered pasa_asmbl_23809.p1, internal, 32264, 32395
-recovered pasa_asmbl_23809.p1, internal, 32824, 32945
-recovered pasa_asmbl_23809.p1, internal, 33120, 33221
-recovered pasa_asmbl_23809.p1, internal, 34245, 34373
-recovered pasa_asmbl_23809.p1, internal, 35077, 35254
-recovered pasa_asmbl_23809.p1, internal, 35380, 35566
-recovered pasa_asmbl_23809.p1, internal, 35941, 36129
Valid prediction for snap_scaffold_2-snap.3588-T1
Valid prediction for snap_scaffold_2-snap.3633-T1
Valid prediction for GlimmerHMM_glimmerT_5554-T1
Valid prediction for snap_scaffold_2-snap.3629-T1
Valid prediction for GlimmerHMM_glimmerT_5553-T1
Valid prediction for snap_scaffold_2-snap.3635-T1
Valid prediction for CodingQuarry_transcript_28842-T1
Valid prediction for Augustus_model.g3733.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18120, rend_intergenic: 8351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19792, rend_intergenic: 18196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23542, rend_intergenic: 20164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28075, rend_intergenic: 24775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28555, rend_intergenic: 28095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32959, rend_intergenic: 29103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35958, rend_intergenic: 33285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37319, rend_intergenic: 36212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42646, rend_intergenic: 37688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54628, rend_intergenic: 46070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76305, rend_intergenic: 68814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86262, rend_intergenic: 83005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87550, rend_intergenic: 87220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99548, rend_intergenic: 96457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105715, rend_intergenic: 103882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107893, rend_intergenic: 106162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113440, rend_intergenic: 109893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116773, rend_intergenic: 114060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120852, rend_intergenic: 119214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148574, rend_intergenic: 145178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164160, rend_intergenic: 150233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176258, rend_intergenic: 173371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185484, rend_intergenic: 181224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189884, rend_intergenic: 186372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 193347
-exon list size: 508


building trellis

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63.5    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.1    
67.3    
67.5    
67.6    
67.8    
68.0    
68.2    
68.4    
68.6    
68.8    
69.0    
69.2    
69.4    
69.6    
69.8    
70.0    
70.2    
70.4    
70.6    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.0    
72.2    
72.4    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.7    
75.9    
76.1    
76.3    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.6    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.6    
79.8    
80.0    
80.2    
80.4    
80.6    
80.8    
81.0    
81.2    
81.4    
81.6    
81.8    
82.0    
82.2    
82.4    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.9    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.5    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.1    
94.3    
94.5    
94.7    
94.9    
95.1    
95.3    
95.5    
95.7    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.1    
97.3    
97.5    
97.6    
97.8    
98.0    
98.2    
98.4    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 18120, rend_intergenic: 8351  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19792, rend_intergenic: 18196  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23542, rend_intergenic: 20164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28075, rend_intergenic: 24775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28555, rend_intergenic: 28095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32959, rend_intergenic: 29103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35958, rend_intergenic: 33285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37319, rend_intergenic: 36212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42646, rend_intergenic: 37688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54628, rend_intergenic: 46070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76305, rend_intergenic: 68814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86262, rend_intergenic: 83005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87550, rend_intergenic: 87220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99548, rend_intergenic: 96457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105715, rend_intergenic: 103882  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107893, rend_intergenic: 106162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113440, rend_intergenic: 109893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116773, rend_intergenic: 114060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120852, rend_intergenic: 119214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148574, rend_intergenic: 145178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164160, rend_intergenic: 150233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176258, rend_intergenic: 173371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185484, rend_intergenic: 181224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189884, rend_intergenic: 186372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11389
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10038
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support