-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2/scaffold_2_15014450-15199647

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_4996-T1
Valid prediction for snap_scaffold_2-snap.2897-T1
Valid prediction for GlimmerHMM_glimmerT_5003-T1
Valid prediction for Augustus_model.g3385.t1
Valid prediction for Augustus_model.g3371.t1
Valid prediction for GlimmerHMM_glimmerT_5010-T1
Valid prediction for Augustus_model.g3378.t1
Valid prediction for snap_scaffold_2-snap.2882-T1
Valid prediction for GlimmerHMM_glimmerT_5013-T1
Valid prediction for Augustus_model.g3365.t1
Couldn't classify 65283, 65394
Couldn't classify 66095, 66175
Sorry, prediction pasa_asmbl_24986.p1 fails validation.
(GTG)	 AG	65283-65394	GT	TGG
(CCG)	 AG	65567-65664	GT	AGG
(ATG)	 AG	65763-65846	GT	AGG
(AAC)	 AG	66095-66175	TG	CGT
-recovered pasa_asmbl_24986.p1, initial, 65763, 65846
-recovered pasa_asmbl_24986.p1, internal, 65283, 65394
-recovered pasa_asmbl_24986.p1, internal, 65567, 65664
-recovered pasa_asmbl_24986.p1, internal, 65763, 65846
Valid prediction for GlimmerHMM_glimmerT_5012-T1
Valid prediction for snap_scaffold_2-snap.2889-T1
Valid prediction for Augustus_model.g3375.t1
Valid prediction for Augustus_model.g3370.t1
Valid prediction for GlimmerHMM_glimmerT_5006-T1
Valid prediction for GlimmerHMM_glimmerT_4994-T1
Valid prediction for snap_scaffold_2-snap.2884-T1
Valid prediction for Augustus_model.g3367.t1
Valid prediction for snap_scaffold_2-snap.2878-T1
Valid prediction for Augustus_model.g3369.t1
Valid prediction for snap_scaffold_2-snap.2870-T1
Valid prediction for GlimmerHMM_glimmerT_5001-T1
Valid prediction for snap_scaffold_2-snap.2887-T1
Valid prediction for GlimmerHMM_glimmerT_5000-T1
Valid prediction for GlimmerHMM_glimmerT_5024-T1
Valid prediction for Augustus_model.g3381.t1
Valid prediction for snap_scaffold_2-snap.2898-T1
Valid prediction for snap_scaffold_2-snap.2875-T1
Valid prediction for snap_scaffold_2-snap.2895-T1
Valid prediction for snap_scaffold_2-snap.2881-T1
Valid prediction for GlimmerHMM_glimmerT_5017-T1
Valid prediction for GlimmerHMM_glimmerT_5016-T1
Valid prediction for snap_scaffold_2-snap.2902-T1
Valid prediction for GlimmerHMM_glimmerT_5002-T1
Valid prediction for snap_scaffold_2-snap.2892-T1
Valid prediction for Augustus_model.g3388.t1
Valid prediction for snap_scaffold_2-snap.2901-T1
Valid prediction for Augustus_model.g3383.t1
Valid prediction for snap_scaffold_2-snap.2890-T1
Valid prediction for GlimmerHMM_glimmerT_5021-T1
Valid prediction for snap_scaffold_2-snap.2873-T1
Valid prediction for GlimmerHMM_glimmerT_4997-T1
Valid prediction for GlimmerHMM_glimmerT_5025-T1
Valid prediction for snap_scaffold_2-snap.2877-T1
Valid prediction for snap_scaffold_2-snap.2883-T1
Valid prediction for GlimmerHMM_glimmerT_5014-T1
Valid prediction for snap_scaffold_2-snap.2893-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2-snap.2876-T1
Valid prediction for Augustus_model.g3387.t1
Valid prediction for snap_scaffold_2-snap.2886-T1
Valid prediction for snap_scaffold_2-snap.2899-T1
Valid prediction for GlimmerHMM_glimmerT_5004-T1
Valid prediction for Augustus_model.g3384.t1
Valid prediction for snap_scaffold_2-snap.2879-T1
Valid prediction for GlimmerHMM_glimmerT_5011-T1
Valid prediction for Augustus_model.g3382.t1
Valid prediction for Augustus_model.g3376.t1
Valid prediction for GlimmerHMM_glimmerT_4998-T1
Valid prediction for snap_scaffold_2-snap.2880-T1
Valid prediction for GlimmerHMM_glimmerT_5007-T1
Valid prediction for snap_scaffold_2-snap.2891-T1
Valid prediction for GlimmerHMM_glimmerT_4995-T1
Valid prediction for snap_scaffold_2-snap.2871-T1
Valid prediction for Augustus_model.g3373.t1
Valid prediction for GlimmerHMM_glimmerT_5005-T1
Valid prediction for Augustus_model.g3374.t1
Valid prediction for GlimmerHMM_glimmerT_5009-T1
Valid prediction for Augustus_model.g3372.t1
Valid prediction for GlimmerHMM_glimmerT_5008-T1
Valid prediction for GlimmerHMM_glimmerT_5020-T1
Valid prediction for Augustus_model.g3366.t1
Valid prediction for Augustus_model.g3377.t1
Valid prediction for GlimmerHMM_glimmerT_5019-T1
Valid prediction for snap_scaffold_2-snap.2872-T1
Valid prediction for snap_scaffold_2-snap.2903-T1
Valid prediction for GlimmerHMM_glimmerT_5023-T1
Valid prediction for snap_scaffold_2-snap.2888-T1
Valid prediction for snap_scaffold_2-snap.2896-T1
Valid prediction for GlimmerHMM_glimmerT_5022-T1
Valid prediction for snap_scaffold_2-snap.2874-T1
Valid prediction for GlimmerHMM_glimmerT_5018-T1
Valid prediction for GlimmerHMM_glimmerT_4999-T1
Valid prediction for GlimmerHMM_glimmerT_5015-T1
Valid prediction for Augustus_model.g3380.t1
Valid prediction for Augustus_model.g3368.t1
Valid prediction for snap_scaffold_2-snap.2900-T1
Valid prediction for snap_scaffold_2-snap.2894-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for snap_scaffold_2-snap.2885-T1
Valid prediction for Augustus_model.g3386.t1
Valid prediction for Augustus_model.g3379.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8461, rend_intergenic: 1588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12470, rend_intergenic: 8973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16548, rend_intergenic: 14215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59508, rend_intergenic: 56919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84782, rend_intergenic: 83430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91450, rend_intergenic: 86170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97118, rend_intergenic: 91517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99740, rend_intergenic: 97524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112969, rend_intergenic: 99880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133933, rend_intergenic: 118060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140396, rend_intergenic: 134518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158758, rend_intergenic: 142067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162415, rend_intergenic: 159623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180022, rend_intergenic: 163418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 185198
-exon list size: 376


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.1    
2.4    
2.6    
2.9    
3.2    
3.4    
3.7    
4.0    
4.2    
4.5    
4.8    
5.0    
5.3    
5.6    
5.8    
6.1    
6.3    
6.6    
6.9    
7.1    
7.4    
7.7    
7.9    
8.2    
8.5    
8.7    
9.0    
9.3    
9.5    
9.8    
10.1    
10.3    
10.6    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.4    
12.7    
13.0    
13.2    
13.5    
13.8    
14.0    
14.3    
14.6    
14.8    
15.1    
15.3    
15.6    
15.9    
16.1    
16.4    
16.7    
16.9    
17.2    
17.5    
17.7    
18.0    
18.3    
18.5    
18.8    
19.0    
19.3    
19.6    
19.8    
20.1    
20.4    
20.6    
20.9    
21.2    
21.4    
21.7    
22.0    
22.2    
22.5    
22.8    
23.0    
23.3    
23.5    
23.8    
24.1    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
25.9    
26.2    
26.5    
26.7    
27.0    
27.2    
27.5    
27.8    
28.0    
28.3    
28.6    
28.8    
29.1    
29.4    
29.6    
29.9    
30.2    
30.4    
30.7    
31.0    
31.2    
31.5    
31.7    
32.0    
32.3    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.1    
34.4    
34.7    
34.9    
35.2    
35.4    
35.7    
36.0    
36.2    
36.5    
36.8    
37.0    
37.3    
37.6    
37.8    
38.1    
38.4    
38.6    
38.9    
39.2    
39.4    
39.7    
39.9    
40.2    
40.5    
40.7    
41.0    
41.3    
41.5    
41.8    
42.1    
42.3    
42.6    
42.9    
43.1    
43.4    
43.7    
43.9    
44.2    
44.4    
44.7    
45.0    
45.2    
45.5    
45.8    
46.0    
46.3    
46.6    
46.8    
47.1    
47.4    
47.6    
47.9    
48.1    
48.4    
48.7    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.3    
51.6    
51.9    
52.1    
52.4    
52.6    
52.9    
53.2    
53.4    
53.7    
54.0    
54.2    
54.5    
54.8    
55.0    
55.3    
55.6    
55.8    
56.1    
56.3    
56.6    
56.9    
57.1    
57.4    
57.7    
57.9    
58.2    
58.5    
58.7    
59.0    
59.3    
59.5    
59.8    
60.1    
60.3    
60.6    
60.8    
61.1    
61.4    
61.6    
61.9    
62.2    
62.4    
62.7    
63.0    
63.2    
63.5    
63.8    
64.0    
64.3    
64.6    
64.8    
65.1    
65.3    
65.6    
65.9    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.7    
68.0    
68.3    
68.5    
68.8    
69.0    
69.3    
69.6    
69.8    
70.1    
70.4    
70.6    
70.9    
71.2    
71.4    
71.7    
72.0    
72.2    
72.5    
72.8    
73.0    
73.3    
73.5    
73.8    
74.1    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
75.9    
76.2    
76.5    
76.7    
77.0    
77.2    
77.5    
77.8    
78.0    
78.3    
78.6    
78.8    
79.1    
79.4    
79.6    
79.9    
80.2    
80.4    
80.7    
81.0    
81.2    
81.5    
81.7    
82.0    
82.3    
82.5    
82.8    
83.1    
83.3    
83.6    
83.9    
84.1    
84.4    
84.7    
84.9    
85.2    
85.4    
85.7    
86.0    
86.2    
86.5    
86.8    
87.0    
87.3    
87.6    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.4    
89.7    
89.9    
90.2    
90.5    
90.7    
91.0    
91.3    
91.5    
91.8    
92.1    
92.3    
92.6    
92.9    
93.1    
93.4    
93.7    
93.9    
94.2    
94.4    
94.7    
95.0    
95.2    
95.5    
95.8    
96.0    
96.3    
96.6    
96.8    
97.1    
97.4    
97.6    
97.9    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 8461, rend_intergenic: 1588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12470, rend_intergenic: 8973  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16548, rend_intergenic: 14215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59508, rend_intergenic: 56919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84782, rend_intergenic: 83430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91450, rend_intergenic: 86170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97118, rend_intergenic: 91517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99740, rend_intergenic: 97524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112969, rend_intergenic: 99880  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133933, rend_intergenic: 118060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140396, rend_intergenic: 134518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158758, rend_intergenic: 142067  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162415, rend_intergenic: 159623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180022, rend_intergenic: 163418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support