-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2/scaffold_2_14862508-15016036

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_4974-T1
Valid prediction for snap_scaffold_2-snap.2868-T1
Valid prediction for snap_scaffold_2-snap.2866-T1
Valid prediction for GlimmerHMM_glimmerT_4976-T1
Valid prediction for GlimmerHMM_glimmerT_4981-T1
Valid prediction for snap_scaffold_2-snap.2862-T1
Valid prediction for snap_scaffold_2-snap.2847-T1
Valid prediction for GlimmerHMM_glimmerT_4973-T1
Valid prediction for GlimmerHMM_glimmerT_4985-T1
Valid prediction for snap_scaffold_2-snap.2844-T1
Valid prediction for snap_scaffold_2-snap.2841-T1
Valid prediction for snap_scaffold_2-snap.2859-T1
Valid prediction for Augustus_model.g3362.t1
Valid prediction for snap_scaffold_2-snap.2838-T1
Valid prediction for snap_scaffold_2-snap.2842-T1
Valid prediction for Augustus_model.g3354.t1
Valid prediction for snap_scaffold_2-snap.2836-T1
Valid prediction for GlimmerHMM_glimmerT_4980-T1
Valid prediction for snap_scaffold_2-snap.2846-T1
Valid prediction for snap_scaffold_2-snap.2856-T1
Valid prediction for snap_scaffold_2-snap.2845-T1
Valid prediction for GlimmerHMM_glimmerT_4983-T1
Valid prediction for GlimmerHMM_glimmerT_4990-T1
Valid prediction for snap_scaffold_2-snap.2849-T1
Valid prediction for Augustus_model.g3352.t1
Valid prediction for snap_scaffold_2-snap.2848-T1
Valid prediction for snap_scaffold_2-snap.2865-T1
Valid prediction for snap_scaffold_2-snap.2855-T1
Valid prediction for Augustus_model.g3356.t1
Valid prediction for snap_scaffold_2-snap.2863-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_4988-T1
Valid prediction for GlimmerHMM_glimmerT_4978-T1
Valid prediction for GlimmerHMM_glimmerT_4991-T1
Valid prediction for GlimmerHMM_glimmerT_4975-T1
Valid prediction for snap_scaffold_2-snap.2843-T1
Valid prediction for GlimmerHMM_glimmerT_4979-T1
Valid prediction for GlimmerHMM_glimmerT_4982-T1
Valid prediction for snap_scaffold_2-snap.2857-T1
Valid prediction for snap_scaffold_2-snap.2840-T1
Valid prediction for GlimmerHMM_glimmerT_4987-T1
Valid prediction for Augustus_model.g3363.t1
Valid prediction for Augustus_model.g3357.t1
Valid prediction for snap_scaffold_2-snap.2852-T1
Valid prediction for snap_scaffold_2-snap.2850-T1
Valid prediction for snap_scaffold_2-snap.2864-T1
Valid prediction for Augustus_model.g3361.t1
Valid prediction for Augustus_model.g3355.t1
Valid prediction for GlimmerHMM_glimmerT_4993-T1
Valid prediction for snap_scaffold_2-snap.2867-T1
Valid prediction for GlimmerHMM_glimmerT_4989-T1
Valid prediction for Augustus_model.g3359.t1
Valid prediction for snap_scaffold_2-snap.2861-T1
Valid prediction for Augustus_model.g3353.t1
Valid prediction for snap_scaffold_2-snap.2839-T1
Valid prediction for GlimmerHMM_glimmerT_4992-T1
Valid prediction for GlimmerHMM_glimmerT_4986-T1
Valid prediction for snap_scaffold_2-snap.2854-T1
Valid prediction for snap_scaffold_2-snap.2853-T1
Valid prediction for snap_scaffold_2-snap.2869-T1
Valid prediction for snap_scaffold_2-snap.2851-T1
Valid prediction for snap_scaffold_2-snap.2837-T1
Valid prediction for GlimmerHMM_glimmerT_4977-T1
Valid prediction for snap_scaffold_2-snap.2858-T1
Valid prediction for Augustus_model.g3358.t1
Valid prediction for GlimmerHMM_glimmerT_4984-T1
Valid prediction for Augustus_model.g3360.t1
Valid prediction for snap_scaffold_2-snap.2860-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16226, rend_intergenic: 16015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19662, rend_intergenic: 17268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22680, rend_intergenic: 21244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40994, rend_intergenic: 30520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69327, rend_intergenic: 60443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 153529
-exon list size: 216


building trellis

0.5    
0.9    
1.4    
1.8    
2.3    
2.8    
3.2    
3.7    
4.1    
4.6    
5.0    
5.5    
6.0    
6.4    
6.9    
7.3    
7.8    
8.3    
8.7    
9.2    
9.6    
10.1    
10.6    
11.0    
11.5    
11.9    
12.4    
12.8    
13.3    
13.8    
14.2    
14.7    
15.1    
15.6    
16.1    
16.5    
17.0    
17.4    
17.9    
18.3    
18.8    
19.3    
19.7    
20.2    
20.6    
21.1    
21.6    
22.0    
22.5    
22.9    
23.4    
23.9    
24.3    
24.8    
25.2    
25.7    
26.1    
26.6    
27.1    
27.5    
28.0    
28.4    
28.9    
29.4    
29.8    
30.3    
30.7    
31.2    
31.7    
32.1    
32.6    
33.0    
33.5    
33.9    
34.4    
34.9    
35.3    
35.8    
36.2    
36.7    
37.2    
37.6    
38.1    
38.5    
39.0    
39.4    
39.9    
40.4    
40.8    
41.3    
41.7    
42.2    
42.7    
43.1    
43.6    
44.0    
44.5    
45.0    
45.4    
45.9    
46.3    
46.8    
47.2    
47.7    
48.2    
48.6    
49.1    
49.5    
50.0    
50.5    
50.9    
51.4    
51.8    
52.3    
52.8    
53.2    
53.7    
54.1    
54.6    
55.0    
55.5    
56.0    
56.4    
56.9    
57.3    
57.8    
58.3    
58.7    
59.2    
59.6    
60.1    
60.6    
61.0    
61.5    
61.9    
62.4    
62.8    
63.3    
63.8    
64.2    
64.7    
65.1    
65.6    
66.1    
66.5    
67.0    
67.4    
67.9    
68.3    
68.8    
69.3    
69.7    
70.2    
70.6    
71.1    
71.6    
72.0    
72.5    
72.9    
73.4    
73.9    
74.3    
74.8    
75.2    
75.7    
76.1    
76.6    
77.1    
77.5    
78.0    
78.4    
78.9    
79.4    
79.8    
80.3    
80.7    
81.2    
81.7    
82.1    
82.6    
83.0    
83.5    
83.9    
84.4    
84.9    
85.3    
85.8    
86.2    
86.7    
87.2    
87.6    
88.1    
88.5    
89.0    
89.4    
89.9    
90.4    
90.8    
91.3    
91.7    
92.2    
92.7    
93.1    
93.6    
94.0    
94.5    
95.0    
95.4    
95.9    
96.3    
96.8    
97.2    
97.7    
98.2    
98.6    
99.1    
99.5    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 16226, rend_intergenic: 16015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19662, rend_intergenic: 17268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22680, rend_intergenic: 21244  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40994, rend_intergenic: 30520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69327, rend_intergenic: 60443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support