-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_2/scaffold_2_11992617-12287643

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2-snap.2291-T1
Valid prediction for snap_scaffold_2-snap.2303-T1
Valid prediction for snap_scaffold_2-snap.2285-T1
Valid prediction for Augustus_model.g3098.t1
Valid prediction for snap_scaffold_2-snap.2304-T1
Valid prediction for snap_scaffold_2-snap.2309-T1
Valid prediction for GlimmerHMM_glimmerT_4595-T1
Valid prediction for GlimmerHMM_glimmerT_4591-T1
Valid prediction for Augustus_model.g3093.t1
Valid prediction for GlimmerHMM_glimmerT_4613-T1
Valid prediction for GlimmerHMM_glimmerT_4610-T1
Valid prediction for snap_scaffold_2-snap.2299-T1
Valid prediction for snap_scaffold_2-snap.2292-T1
Valid prediction for GlimmerHMM_glimmerT_4592-T1
Valid prediction for snap_scaffold_2-snap.2296-T1
Valid prediction for snap_scaffold_2-snap.2286-T1
Valid prediction for snap_scaffold_2-snap.2310-T1
Valid prediction for GlimmerHMM_glimmerT_4598-T1
Valid prediction for Augustus_model.g3094.t1
Valid prediction for snap_scaffold_2-snap.2290-T1
Valid prediction for snap_scaffold_2-snap.2288-T1
Valid prediction for GlimmerHMM_glimmerT_4594-T1
Valid prediction for snap_scaffold_2-snap.2283-T1
Valid prediction for GlimmerHMM_glimmerT_4606-T1
Valid prediction for GlimmerHMM_glimmerT_4609-T1
Valid prediction for snap_scaffold_2-snap.2300-T1
Valid prediction for GlimmerHMM_glimmerT_4596-T1
Valid prediction for GlimmerHMM_glimmerT_4607-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_4600-T1
Valid prediction for snap_scaffold_2-snap.2305-T1
Valid prediction for Augustus_model.g3099.t1
Valid prediction for GlimmerHMM_glimmerT_4601-T1
Valid prediction for Augustus_model.g3095.t1
Valid prediction for snap_scaffold_2-snap.2294-T1
Valid prediction for snap_scaffold_2-snap.2293-T1
Valid prediction for GlimmerHMM_glimmerT_4604-T1
Valid prediction for Augustus_model.g3096.t1
Valid prediction for GlimmerHMM_glimmerT_4593-T1
Valid prediction for snap_scaffold_2-snap.2284-T1
Valid prediction for GlimmerHMM_glimmerT_4602-T1
Valid prediction for snap_scaffold_2-snap.2298-T1
Valid prediction for GlimmerHMM_glimmerT_4603-T1
Valid prediction for GlimmerHMM_glimmerT_4599-T1
Valid prediction for snap_scaffold_2-snap.2313-T1
Valid prediction for snap_scaffold_2-snap.2282-T1
Valid prediction for snap_scaffold_2-snap.2297-T1
Valid prediction for GlimmerHMM_glimmerT_4608-T1
Valid prediction for GlimmerHMM_glimmerT_4605-T1
Valid prediction for snap_scaffold_2-snap.2312-T1
Valid prediction for snap_scaffold_2-snap.2295-T1
Valid prediction for GlimmerHMM_glimmerT_4597-T1
Valid prediction for snap_scaffold_2-snap.2308-T1
Valid prediction for Augustus_model.g3092.t1
Valid prediction for snap_scaffold_2-snap.2306-T1
Valid prediction for Augustus_model.g3097.t1
Valid prediction for snap_scaffold_2-snap.2302-T1
Valid prediction for snap_scaffold_2-snap.2307-T1
Valid prediction for snap_scaffold_2-snap.2287-T1
Valid prediction for snap_scaffold_2-snap.2281-T1
Valid prediction for snap_scaffold_2-snap.2311-T1
Valid prediction for Augustus_model.g3091.t1
Valid prediction for snap_scaffold_2-snap.2301-T1
Valid prediction for GlimmerHMM_glimmerT_4612-T1
Valid prediction for snap_scaffold_2-snap.2289-T1
Valid prediction for GlimmerHMM_glimmerT_4611-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17072, rend_intergenic: 12889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34931, rend_intergenic: 34084  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46399, rend_intergenic: 45153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135743, rend_intergenic: 127910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 265245, rend_intergenic: 263950  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 295027
-exon list size: 182


building trellis

0.5    
1.1    
1.6    
2.2    
2.7    
3.3    
3.8    
4.3    
4.9    
5.4    
6.0    
6.5    
7.1    
7.6    
8.2    
8.7    
9.2    
9.8    
10.3    
10.9    
11.4    
12.0    
12.5    
13.0    
13.6    
14.1    
14.7    
15.2    
15.8    
16.3    
16.8    
17.4    
17.9    
18.5    
19.0    
19.6    
20.1    
20.7    
21.2    
21.7    
22.3    
22.8    
23.4    
23.9    
24.5    
25.0    
25.5    
26.1    
26.6    
27.2    
27.7    
28.3    
28.8    
29.3    
29.9    
30.4    
31.0    
31.5    
32.1    
32.6    
33.2    
33.7    
34.2    
34.8    
35.3    
35.9    
36.4    
37.0    
37.5    
38.0    
38.6    
39.1    
39.7    
40.2    
40.8    
41.3    
41.8    
42.4    
42.9    
43.5    
44.0    
44.6    
45.1    
45.7    
46.2    
46.7    
47.3    
47.8    
48.4    
48.9    
49.5    
50.0    
50.5    
51.1    
51.6    
52.2    
52.7    
53.3    
53.8    
54.3    
54.9    
55.4    
56.0    
56.5    
57.1    
57.6    
58.2    
58.7    
59.2    
59.8    
60.3    
60.9    
61.4    
62.0    
62.5    
63.0    
63.6    
64.1    
64.7    
65.2    
65.8    
66.3    
66.8    
67.4    
67.9    
68.5    
69.0    
69.6    
70.1    
70.7    
71.2    
71.7    
72.3    
72.8    
73.4    
73.9    
74.5    
75.0    
75.5    
76.1    
76.6    
77.2    
77.7    
78.3    
78.8    
79.3    
79.9    
80.4    
81.0    
81.5    
82.1    
82.6    
83.2    
83.7    
84.2    
84.8    
85.3    
85.9    
86.4    
87.0    
87.5    
88.0    
88.6    
89.1    
89.7    
90.2    
90.8    
91.3    
91.8    
92.4    
92.9    
93.5    
94.0    
94.6    
95.1    
95.7    
96.2    
96.7    
97.3    
97.8    
98.4    
98.9    
99.5    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 17072, rend_intergenic: 12889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34931, rend_intergenic: 34084  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46399, rend_intergenic: 45153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135743, rend_intergenic: 127910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 265245, rend_intergenic: 263950  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 268403 - 295027
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 278039 - 295027
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 278039 - 293016
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 282700 - 293016
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support