-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1999

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 27, 44
Couldn't classify 1439, 1678
Sorry, prediction pasa_asmbl_22777.p1 fails validation.
(AGG)	 TT	27-44	GT	AGG
(GCC)	 AG	220-398	GT	AGG
(ACC)	 AG	1110-1239	GT	GCG
(GAT)	 AG	1439-1678	A	TTA
-recovered pasa_asmbl_22777.p1, internal, 220, 398
-recovered pasa_asmbl_22777.p1, internal, 1110, 1239
Couldn't classify 220, 398
Couldn't classify 1439, 1597
Sorry, prediction snap_scaffold_1999-snap.2-T1 fails validation.
(GCC)	 AG	220-398	GT	AGG
(ACC)	 AG	1110-1239	GT	GCG
(GAT)	 AG	1439-1597	GT	TGG
-recovered snap_scaffold_1999-snap.2-T1, internal, 220, 398
-recovered snap_scaffold_1999-snap.2-T1, internal, 1110, 1239
-recovered snap_scaffold_1999-snap.2-T1, internal, 1439, 1597
Couldn't classify 220, 398
Couldn't classify 1439, 1597
Sorry, prediction Augustus_model.g40724.t1 fails validation.
(GCC)	 AG	220-398	GT	AGG
(ACC)	 AG	1110-1239	GT	GCG
(GAT)	 AG	1439-1597	GT	TGG
-recovered Augustus_model.g40724.t1, internal, 220, 398
-recovered Augustus_model.g40724.t1, internal, 1110, 1239
-recovered Augustus_model.g40724.t1, internal, 1439, 1597
Couldn't classify 1439, 1597
Sorry, prediction GlimmerHMM_glimmerT_61421-T1 fails validation.
(ATG)	 AG	346-398	GT	AGG
(ACC)	 AG	1110-1239	GT	GCG
(GAT)	 AG	1439-1597	GT	TGG
-recovered GlimmerHMM_glimmerT_61421-T1, initial, 346, 398
-recovered GlimmerHMM_glimmerT_61421-T1, internal, 346, 398
-recovered GlimmerHMM_glimmerT_61421-T1, internal, 1110, 1239
-recovered GlimmerHMM_glimmerT_61421-T1, internal, 1439, 1597

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 133, 223
Couldn't classify 1344, 1479
Sorry, prediction snap_scaffold_1999-snap.1-T1 fails validation.
(CCT)	 AG	133-223	GT	AGG
(GAT)	 AG	1344-1479	GT	AGG
-recovered snap_scaffold_1999-snap.1-T1, internal, 133, 223
-recovered snap_scaffold_1999-snap.1-T1, internal, 1344, 1479

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1547, rend_intergenic: 220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1679
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1547, rend_intergenic: 220  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support