-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_199

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 933, 1075
Sorry, prediction snap_scaffold_199-snap.2-T1 fails validation.
(CGG)	 AG	933-1075	GT	GAG
(CAA)	 AG	1097-1183	GT	GGG
(GCT)	 AG	2527-2586	GT	AGG
(GTC)	 AG	7017-7127	GT	CGG
(ATT)	 AG	7524-7843	GT	TTG
(TAA)	 AG	9320-9396	AA	GAA
-recovered snap_scaffold_199-snap.2-T1, terminal, 9320, 9396
-recovered snap_scaffold_199-snap.2-T1, internal, 933, 1075
-recovered snap_scaffold_199-snap.2-T1, internal, 1097, 1183
-recovered snap_scaffold_199-snap.2-T1, internal, 2527, 2586
-recovered snap_scaffold_199-snap.2-T1, internal, 7017, 7127
-recovered snap_scaffold_199-snap.2-T1, internal, 7524, 7843
Valid prediction for Augustus_model.g39739.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59994-T1
Couldn't classify 9165, 9315
Sorry, prediction snap_scaffold_199-snap.1-T1 fails validation.
(ATG)	 TG	2886-3069	GT	AGG
(ATA)	 AG	3788-4084	GT	GCG
(ACC)	 AG	7255-7338	GT	TGG
(CCG)	 AG	8187-8265	GT	AAG
(TAG)	 AG	9165-9315	GT	TGG
-recovered snap_scaffold_199-snap.1-T1, initial, 2886, 3069
-recovered snap_scaffold_199-snap.1-T1, internal, 3788, 4084
-recovered snap_scaffold_199-snap.1-T1, internal, 7255, 7338
-recovered snap_scaffold_199-snap.1-T1, internal, 8187, 8265
-recovered snap_scaffold_199-snap.1-T1, internal, 9165, 9315

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6976, rend_intergenic: 933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9861
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6976, rend_intergenic: 933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support