-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_198

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_198-snap.3-T1
Valid prediction for snap_scaffold_198-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59992-T1
Couldn't classify 1719, 1936
Sorry, prediction GlimmerHMM_glimmerT_59993-T1 fails validation.
(GCG)	 AG	1719-1936	GT	TGG
(TGT)	 AG	3172-3238	GT	ACG
(GTA)	 AG	5298-5534	GT	CTG
(CCT)	 AG	5946-6457	AC	GAA
-recovered GlimmerHMM_glimmerT_59993-T1, terminal, 5946, 6457
-recovered GlimmerHMM_glimmerT_59993-T1, internal, 1719, 1936
-recovered GlimmerHMM_glimmerT_59993-T1, internal, 3172, 3238
-recovered GlimmerHMM_glimmerT_59993-T1, internal, 5298, 5534
Couldn't classify 1719, 1936
Couldn't classify 9198, 9465
Sorry, prediction snap_scaffold_198-snap.1-T1 fails validation.
(GCG)	 AG	1719-1936	GT	TGG
(TGT)	 AG	3172-3238	GT	ACG
(GTA)	 AG	5298-5477	GT	TGG
(CCT)	 AG	5946-6400	GT	GAG
(TCG)	 AG	6421-6628	GT	GAG
(GCC)	 AG	7329-7351	GT	AAG
(GGG)	 AG	7946-7996	GT	CGG
(AGA)	 AG	9198-9465	GT	ATG
-recovered snap_scaffold_198-snap.1-T1, internal, 1719, 1936
-recovered snap_scaffold_198-snap.1-T1, internal, 3172, 3238
-recovered snap_scaffold_198-snap.1-T1, internal, 5298, 5477
-recovered snap_scaffold_198-snap.1-T1, internal, 5946, 6400
-recovered snap_scaffold_198-snap.1-T1, internal, 6421, 6628
-recovered snap_scaffold_198-snap.1-T1, internal, 7329, 7351
-recovered snap_scaffold_198-snap.1-T1, internal, 7946, 7996
-recovered snap_scaffold_198-snap.1-T1, internal, 9198, 9465
Valid prediction for Augustus_model.g39738.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8175, rend_intergenic: 3977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9893
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 8175, rend_intergenic: 3977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support