-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_197

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9337, 9491
Sorry, prediction snap_scaffold_197-snap.2-T1 fails validation.
(ATG)	 CC	1312-1332	GT	TGG
(AAC)	 AG	2871-2992	GT	CGG
(GTG)	 AG	5646-5792	GT	AGG
(AGA)	 AG	5882-5999	GT	AGG
(GGT)	 AG	7487-8208	GT	AGG
(GTT)	 AG	8373-8440	GT	ACG
(AGC)	 AG	9337-9491	GT	AGG
-recovered snap_scaffold_197-snap.2-T1, initial, 1312, 1332
-recovered snap_scaffold_197-snap.2-T1, internal, 2871, 2992
-recovered snap_scaffold_197-snap.2-T1, internal, 5646, 5792
-recovered snap_scaffold_197-snap.2-T1, internal, 5882, 5999
-recovered snap_scaffold_197-snap.2-T1, internal, 7487, 8208
-recovered snap_scaffold_197-snap.2-T1, internal, 8373, 8440
-recovered snap_scaffold_197-snap.2-T1, internal, 9337, 9491

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 436, 484
Sorry, prediction GlimmerHMM_glimmerT_59991-T1 fails validation.
(TCC)	 AG	436-484	GT	GAG
(GCT)	 AG	1498-1621	GT	CTG
(ATC)	 AG	2250-2430	GT	AGG
(GTC)	 AG	3936-4028	GT	TGG
(CCT)	 AG	4211-4383	CC	AGC
-recovered GlimmerHMM_glimmerT_59991-T1, terminal, 4211, 4383
-recovered GlimmerHMM_glimmerT_59991-T1, internal, 436, 484
-recovered GlimmerHMM_glimmerT_59991-T1, internal, 1498, 1621
-recovered GlimmerHMM_glimmerT_59991-T1, internal, 2250, 2430
-recovered GlimmerHMM_glimmerT_59991-T1, internal, 3936, 4028
Valid prediction for Augustus_model.g39737.t1
Couldn't classify 436, 573
Couldn't classify 9374, 9421
Sorry, prediction snap_scaffold_197-snap.1-T1 fails validation.
(TCC)	 AG	436-573	GT	TGG
(GCT)	 AG	1498-1621	GT	CTG
(ATC)	 AG	2250-2430	GT	AGG
(GTC)	 AG	3936-4028	GT	TGG
(ATG)	 AG	7425-7463	GT	TGG
(AGC)	 AG	9374-9421	GT	CGG
-recovered snap_scaffold_197-snap.1-T1, initial, 7425, 7463
-recovered snap_scaffold_197-snap.1-T1, internal, 436, 573
-recovered snap_scaffold_197-snap.1-T1, internal, 1498, 1621
-recovered snap_scaffold_197-snap.1-T1, internal, 2250, 2430
-recovered snap_scaffold_197-snap.1-T1, internal, 3936, 4028
-recovered snap_scaffold_197-snap.1-T1, internal, 7425, 7463
-recovered snap_scaffold_197-snap.1-T1, internal, 9374, 9421

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9471, rend_intergenic: 1312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9906
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 9471, rend_intergenic: 1312  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support