-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1965

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 155, 317
Sorry, prediction snap_scaffold_1965-snap.1-T1 fails validation.
(ACA)	 AG	155-317	GT	AGG
(GGA)	 AG	1065-1316	AC	AAA
-recovered snap_scaffold_1965-snap.1-T1, terminal, 1065, 1316
-recovered snap_scaffold_1965-snap.1-T1, internal, 155, 317
Valid prediction for Augustus_model.g40709.t1
Couldn't classify 183, 317
Sorry, prediction GlimmerHMM_glimmerT_61402-T1 fails validation.
(GCC)	 AG	183-317	GT	AGG
(CCA)	 AG	1038-1316	AC	AAA
-recovered GlimmerHMM_glimmerT_61402-T1, terminal, 1038, 1316
-recovered GlimmerHMM_glimmerT_61402-T1, internal, 183, 317

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1717
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support