-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1950

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 290, 397
Couldn't classify 1560, 1667
Sorry, prediction snap_scaffold_1950-snap.1-T1 fails validation.
(GTG)	 AG	290-397	GT	AAG
(GCC)	 AG	682-846	GT	GTG
(GAT)	 AG	1560-1667	GT	AGG
-recovered snap_scaffold_1950-snap.1-T1, internal, 290, 397
-recovered snap_scaffold_1950-snap.1-T1, internal, 682, 846
-recovered snap_scaffold_1950-snap.1-T1, internal, 1560, 1667
Couldn't classify 290, 397
Couldn't classify 1560, 1667
Sorry, prediction Augustus_model.g40704.t1 fails validation.
(GTG)	 AG	290-397	GT	AAG
(CAG)	 AG	679-846	GT	GTG
(GAT)	 AG	1560-1667	GT	AGG
-recovered Augustus_model.g40704.t1, internal, 290, 397
-recovered Augustus_model.g40704.t1, internal, 679, 846
-recovered Augustus_model.g40704.t1, internal, 1560, 1667
Couldn't classify 1560, 1665
Sorry, prediction pasa_asmbl_22762.p1 fails validation.
(ATG)	 GC	321-397	GT	AAG
(CAG)	 AG	679-846	GT	GTG
(GAT)	 AG	1560-1665	AG	ACA
-recovered pasa_asmbl_22762.p1, initial, 321, 397
-recovered pasa_asmbl_22762.p1, internal, 679, 846
Couldn't classify 290, 397
Sorry, prediction GlimmerHMM_glimmerT_61399-T1 fails validation.
(GTG)	 AG	290-397	GT	AAG
(CAG)	 AG	679-846	GT	GTG
(GAT)	 AG	1560-1671	CA	AAC
-recovered GlimmerHMM_glimmerT_61399-T1, terminal, 1560, 1671
-recovered GlimmerHMM_glimmerT_61399-T1, internal, 290, 397
-recovered GlimmerHMM_glimmerT_61399-T1, internal, 679, 846

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1744
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support