-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1946

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1592, 1654
Sorry, prediction snap_scaffold_1946-snap.1-T1 fails validation.
(ATG)	 AA	898-929	GT	TTG
(GGC)	 AG	961-1255	GT	AGG
(GTG)	 AG	1592-1654	GT	AAG
-recovered snap_scaffold_1946-snap.1-T1, initial, 898, 929
-recovered snap_scaffold_1946-snap.1-T1, internal, 961, 1255
-recovered snap_scaffold_1946-snap.1-T1, internal, 1592, 1654
Couldn't classify 961, 1263
Sorry, prediction GlimmerHMM_glimmerT_61397-T1 fails validation.
(GGC)	 AG	961-1263	GT	CTG
(GTG)	 AG	1592-1658	GT	GAG
-recovered GlimmerHMM_glimmerT_61397-T1, terminal, 1592, 1658
-recovered GlimmerHMM_glimmerT_61397-T1, internal, 961, 1263
-recovered GlimmerHMM_glimmerT_61397-T1, internal, 1592, 1658
Couldn't classify 1592, 1750
Sorry, prediction Augustus_model.g40703.t1 fails validation.
(ATG)	 AG	526-548	GT	GTG
(GGC)	 AG	961-1255	GT	AGG
(GTG)	 AG	1592-1750		CC
-recovered Augustus_model.g40703.t1, initial, 526, 548
-recovered Augustus_model.g40703.t1, internal, 526, 548
-recovered Augustus_model.g40703.t1, internal, 961, 1255

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1750
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support