-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1937

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 318, 487
Couldn't classify 1498, 1722
Sorry, prediction Augustus_model.g40699.t1 fails validation.
(TGT)	 AG	318-487	GT	GGG
(GTG)	 AG	928-1104	GT	AGG
(CCG)	 AG	1498-1722	GT	AGG
-recovered Augustus_model.g40699.t1, internal, 318, 487
-recovered Augustus_model.g40699.t1, internal, 928, 1104
-recovered Augustus_model.g40699.t1, internal, 1498, 1722
Couldn't classify 1498, 1658
Sorry, prediction GlimmerHMM_glimmerT_61394-T1 fails validation.
(ATG)	 AG	340-487	GT	GGG
(GTG)	 AG	928-1104	GT	AGG
(CCG)	 AG	1498-1658	GT	TCG
-recovered GlimmerHMM_glimmerT_61394-T1, initial, 340, 487
-recovered GlimmerHMM_glimmerT_61394-T1, internal, 340, 487
-recovered GlimmerHMM_glimmerT_61394-T1, internal, 928, 1104
-recovered GlimmerHMM_glimmerT_61394-T1, internal, 1498, 1658
Couldn't classify 318, 487
Couldn't classify 1498, 1722
Sorry, prediction snap_scaffold_1937-snap.1-T1 fails validation.
(TGT)	 AG	318-487	GT	GGG
(GTG)	 AG	928-1104	GT	AGG
(CCG)	 AG	1498-1722	GT	AGG
-recovered snap_scaffold_1937-snap.1-T1, internal, 318, 487
-recovered snap_scaffold_1937-snap.1-T1, internal, 928, 1104
-recovered snap_scaffold_1937-snap.1-T1, internal, 1498, 1722
Couldn't classify 316, 487
Couldn't classify 1498, 1724
Sorry, prediction pasa_asmbl_22757.p1 fails validation.
(AGT)	 GC	316-487	GT	GGG
(GTG)	 AG	928-1104	GT	AGG
(CCG)	 AG	1498-1724	GT	GTG
-recovered pasa_asmbl_22757.p1, internal, 928, 1104
-recovered pasa_asmbl_22757.p1, internal, 1498, 1724

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1235, 1330
Sorry, prediction snap_scaffold_1937-snap.2-T1 fails validation.
(ATG)	 CG	186-470	GT	AAG
(AAG)	 AG	1235-1330	GT	CGG
-recovered snap_scaffold_1937-snap.2-T1, initial, 186, 470
-recovered snap_scaffold_1937-snap.2-T1, internal, 1235, 1330

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1722, rend_intergenic: 429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1758
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1722, rend_intergenic: 429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support