-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_193

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_193-snap.1-T1
Valid prediction for snap_scaffold_193-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59982-T1
Couldn't classify 9045, 9111
Sorry, prediction GlimmerHMM_glimmerT_59983-T1 fails validation.
(ATG)	 AC	7839-7989	GT	AGG
(ATC)	 AG	9045-9111	GT	GGG
-recovered GlimmerHMM_glimmerT_59983-T1, initial, 7839, 7989
-recovered GlimmerHMM_glimmerT_59983-T1, internal, 9045, 9111
Couldn't classify 2256, 2394
Couldn't classify 3438, 3566
Sorry, prediction pasa_asmbl_22755.p1 fails validation.
(ATA)	 CA	2256-2394	GT	CTG
(GCA)	 AG	2501-2695	GT	TGG
(ATG)	 AG	3154-3299	GT	AGG
(GAA)	 AG	3438-3566	TA	AGT
add_exon() Sorry, pasa_asmbl_22755.p1 3154-3299-initial-1 is invalid.
-recovered pasa_asmbl_22755.p1, initial, 3154, 3299
-recovered pasa_asmbl_22755.p1, internal, 2501, 2695
-recovered pasa_asmbl_22755.p1, internal, 3154, 3299
Valid prediction for HiQ_model.g39726.t1
Valid prediction for Augustus_model.g39727.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9957
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support