-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1922

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 345, 455
Couldn't classify 1033, 1133
Sorry, prediction Augustus_model.g40693.t1 fails validation.
(CTG)	 AG	345-455	GT	ACG
(GTG)	 AG	540-688	GT	AGG
(GAT)	 AG	1033-1133	GT	CAG
-recovered Augustus_model.g40693.t1, internal, 345, 455
-recovered Augustus_model.g40693.t1, internal, 540, 688
-recovered Augustus_model.g40693.t1, internal, 1033, 1133
Couldn't classify 540, 688
Couldn't classify 1480, 1582
Sorry, prediction snap_scaffold_1922-snap.1-T1 fails validation.
(GTG)	 AG	540-688	GT	AGG
(GTG)	 AG	1373-1442	GT	AGG
(GTG)	 AG	1480-1582	GT	AGG
-recovered snap_scaffold_1922-snap.1-T1, internal, 540, 688
-recovered snap_scaffold_1922-snap.1-T1, internal, 1373, 1442
-recovered snap_scaffold_1922-snap.1-T1, internal, 1480, 1582

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61389-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1772
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support