-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1918

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 662, 687
Couldn't classify 1652, 1732
Sorry, prediction snap_scaffold_1918-snap.1-T1 fails validation.
(GGA)	 AG	662-687	GT	CGG
(ATG)	 AG	1346-1435	GT	TGG
(ATC)	 AG	1652-1732	GT	AGG
-recovered snap_scaffold_1918-snap.1-T1, initial, 1346, 1435
-recovered snap_scaffold_1918-snap.1-T1, internal, 662, 687
-recovered snap_scaffold_1918-snap.1-T1, internal, 1346, 1435
-recovered snap_scaffold_1918-snap.1-T1, internal, 1652, 1732
Couldn't classify 1652, 1732
Sorry, prediction Augustus_model.g40690.t1 fails validation.
(ATG)	 AG	921-950	GT	GCG
(ATG)	 AG	1346-1435	GT	TGG
(ATC)	 AG	1652-1732	GT	AGG
-recovered Augustus_model.g40690.t1, initial, 921, 950
-recovered Augustus_model.g40690.t1, initial, 1346, 1435
-recovered Augustus_model.g40690.t1, internal, 921, 950
-recovered Augustus_model.g40690.t1, internal, 1346, 1435
-recovered Augustus_model.g40690.t1, internal, 1652, 1732

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1775
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support