-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1913

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 554, 700
Couldn't classify 1613, 1732
Sorry, prediction Augustus_model.g40688.t1 fails validation.
(ACA)	 AG	554-700	GT	TGG
(GAG)	 AG	1175-1270	GT	AGG
(ATC)	 AG	1613-1732	GT	AGG
-recovered Augustus_model.g40688.t1, internal, 554, 700
-recovered Augustus_model.g40688.t1, internal, 1175, 1270
-recovered Augustus_model.g40688.t1, internal, 1613, 1732
Couldn't classify 554, 700
Couldn't classify 1613, 1732
Sorry, prediction snap_scaffold_1913-snap.1-T1 fails validation.
(ACA)	 AG	554-700	GT	TGG
(GAG)	 AG	1175-1270	GT	AGG
(ATC)	 AG	1613-1732	GT	AGG
-recovered snap_scaffold_1913-snap.1-T1, internal, 554, 700
-recovered snap_scaffold_1913-snap.1-T1, internal, 1175, 1270
-recovered snap_scaffold_1913-snap.1-T1, internal, 1613, 1732
Couldn't classify 554, 700
Sorry, prediction GlimmerHMM_glimmerT_61385-T1 fails validation.
(ACA)	 AG	554-700	GT	TGG
(GAG)	 AG	1175-1270	GT	AGG
(ATC)	 AG	1613-1753	CT	AAC
-recovered GlimmerHMM_glimmerT_61385-T1, terminal, 1613, 1753
-recovered GlimmerHMM_glimmerT_61385-T1, internal, 554, 700
-recovered GlimmerHMM_glimmerT_61385-T1, internal, 1175, 1270
Couldn't classify 554, 700
Couldn't classify 1613, 1750
Sorry, prediction pasa_asmbl_22751.p1 fails validation.
(ACA)	 AG	554-700	GT	TGG
(GAG)	 AG	1175-1270	GT	AGG
(ATC)	 AG	1613-1750	TA	GAT
-recovered pasa_asmbl_22751.p1, internal, 554, 700
-recovered pasa_asmbl_22751.p1, internal, 1175, 1270

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1779
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support