-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1912

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61384-T1
Couldn't classify 1511, 1601
Sorry, prediction snap_scaffold_1912-snap.1-T1 fails validation.
(ATG)	 AA	152-194	GT	GAG
(CAC)	 AG	1059-1158	GT	GAG
(ACG)	 AG	1511-1601	GT	TGG
-recovered snap_scaffold_1912-snap.1-T1, initial, 152, 194
add_exon() Sorry, snap_scaffold_1912-snap.1-T1 1059-1158-terminal-3 is invalid.
-recovered snap_scaffold_1912-snap.1-T1, terminal, 1059, 1158
-recovered snap_scaffold_1912-snap.1-T1, internal, 1059, 1158
-recovered snap_scaffold_1912-snap.1-T1, internal, 1511, 1601
Couldn't classify 1059, 1158
Sorry, prediction Augustus_model.g40687.t1 fails validation.
(CAC)	 AG	1059-1158	GT	GAG
(ACG)	 AG	1511-1619	AG	GAA
add_exon() Sorry, Augustus_model.g40687.t1 1059-1158-terminal-3 is invalid.
-recovered Augustus_model.g40687.t1, terminal, 1059, 1158
-recovered Augustus_model.g40687.t1, terminal, 1511, 1619
-recovered Augustus_model.g40687.t1, internal, 1059, 1158

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1780
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support