-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_191

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59980-T1
Couldn't classify 8751, 9223
Sorry, prediction snap_scaffold_191-snap.2-T1 fails validation.
(ATG)	 AT	5829-5913	GT	AGG
(CCC)	 AG	8751-9223	GT	TGG
-recovered snap_scaffold_191-snap.2-T1, initial, 5829, 5913
-recovered snap_scaffold_191-snap.2-T1, internal, 8751, 9223

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 437, 575
Sorry, prediction snap_scaffold_191-snap.1-T1 fails validation.
(CCT)	 AG	437-575	GT	AGG
(GGT)	 AG	1180-1384	GT	GAG
(GTA)	 AG	1659-1710	GT	AAG
(GCT)	 AG	3290-3308	GT	AGG
(TGG)	 AG	4331-4412	GT	CAG
(GCT)	 AG	9638-9789	TT	AAT
add_exon() Sorry, snap_scaffold_191-snap.1-T1 1659-1710-terminal-3 is invalid.
-recovered snap_scaffold_191-snap.1-T1, terminal, 1659, 1710
-recovered snap_scaffold_191-snap.1-T1, terminal, 9638, 9789
-recovered snap_scaffold_191-snap.1-T1, internal, 437, 575
-recovered snap_scaffold_191-snap.1-T1, internal, 1180, 1384
-recovered snap_scaffold_191-snap.1-T1, internal, 1659, 1710
-recovered snap_scaffold_191-snap.1-T1, internal, 3290, 3308
-recovered snap_scaffold_191-snap.1-T1, internal, 4331, 4412

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9561, rend_intergenic: 5829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9997
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 9561, rend_intergenic: 5829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support