-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1901

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 590, 710
Couldn't classify 1240, 1473
Sorry, prediction snap_scaffold_1901-snap.1-T1 fails validation.
(GGG)	 AG	590-710	GT	CCG
(CGC)	 AG	1240-1473	GT	AGG
-recovered snap_scaffold_1901-snap.1-T1, internal, 590, 710
-recovered snap_scaffold_1901-snap.1-T1, internal, 1240, 1473
Couldn't classify 1234, 1554
Sorry, prediction pasa_asmbl_22749.p1 fails validation.
(CTC)	 CT	1234-1554	TG	AGT
Couldn't classify 1240, 1473
Sorry, prediction Augustus_model.g40685.t1 fails validation.
(ATG)	 GA	165-190	GT	AGG
(GGG)	 AG	590-710	GT	CCG
(CGC)	 AG	1240-1473	GT	AGG
-recovered Augustus_model.g40685.t1, initial, 165, 190
-recovered Augustus_model.g40685.t1, internal, 590, 710
-recovered Augustus_model.g40685.t1, internal, 1240, 1473
Couldn't classify 590, 721
Sorry, prediction GlimmerHMM_glimmerT_61383-T1 fails validation.
(GGG)	 AG	590-721	GT	AAG
(CGC)	 AG	1240-1554	TG	AGT
-recovered GlimmerHMM_glimmerT_61383-T1, terminal, 1240, 1554
-recovered GlimmerHMM_glimmerT_61383-T1, internal, 590, 721

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1795
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support